18 items (Bradyrhizobium diazoefficiens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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protein homology

Your Input:
	ndvA	Cyclic beta-1,2-glucan ABC transporter; Involved in beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation (By similarity). (602 aa)
	nolK	GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction. (335 aa)
	noeL	GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (361 aa)
	AND87313.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1716 aa)
	nodD2	LysR family transcriptional regulator; NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers (By similarity). (330 aa)
	nodD1	LysR family transcriptional regulator; NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers (By similarity). (314 aa)
	nodS	SAM-dependent methlyltransferase; SAM-utilizing methyltransferase involved in nod factor synthesis. (209 aa)
	nodU	Nodulation protein NodU; Involved in 6-O-carbamoylation of Nod-factors. (569 aa)
	nolO	Nodulation protein; Involved in 6-O-carbamoylation of Nod-factors. (548 aa)
	nodZ	Nodulation protein NodZ; Fucosyltransferase which adds the fucose moiety of the nod factor on its terminal reducing N-acetylglucosamine end. Uses GDP- fucose as the donor group. (328 aa)
	noeI	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	AND87615.1	NoeE; Derived by automated computational analysis using gene prediction method: Protein Homology. (115 aa)
	ndvC	Beta-(1-6) glucans synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (519 aa)
	ndvB	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (889 aa)
	AND90959.1	Lectin; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	greA	Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. (157 aa)
	exoB	UDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (330 aa)
	AND93063.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1441 aa)

Your Current Organism:

Bradyrhizobium diazoefficiens

NCBI taxonomy Id: 224911
Other names: B. diazoefficiens USDA 110, Bradyrhizobium diazoefficiens USDA 110, Bradyrhizobium japonicum USDA 110

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AND87313.1	nodS	AAV28_05395	AAV28_06975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	SAM-dependent methlyltransferase; SAM-utilizing methyltransferase involved in nod factor synthesis.	0.475
AND87313.1	noeI	AAV28_05395	AAV28_07135	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
AND87615.1	nodD1	AAV28_07195	AAV28_06950	NoeE; Derived by automated computational analysis using gene prediction method: Protein Homology.	LysR family transcriptional regulator; NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers (By similarity).	0.450
AND87615.1	nodD2	AAV28_07195	AAV28_06940	NoeE; Derived by automated computational analysis using gene prediction method: Protein Homology.	LysR family transcriptional regulator; NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers (By similarity).	0.449
AND87615.1	nodZ	AAV28_07195	AAV28_07010	NoeE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nodulation protein NodZ; Fucosyltransferase which adds the fucose moiety of the nod factor on its terminal reducing N-acetylglucosamine end. Uses GDP- fucose as the donor group.	0.451
AND87615.1	noeI	AAV28_07195	AAV28_07135	NoeE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.633
AND87615.1	noeL	AAV28_07195	AAV28_05060	NoeE; Derived by automated computational analysis using gene prediction method: Protein Homology.	GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.	0.522
AND87615.1	nolK	AAV28_07195	AAV28_05055	NoeE; Derived by automated computational analysis using gene prediction method: Protein Homology.	GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.	0.464
AND87615.1	nolO	AAV28_07195	AAV28_07005	NoeE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nodulation protein; Involved in 6-O-carbamoylation of Nod-factors.	0.456
AND93063.1	nodS	AAV28_38910	AAV28_06975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	SAM-dependent methlyltransferase; SAM-utilizing methyltransferase involved in nod factor synthesis.	0.487
AND93063.1	noeI	AAV28_38910	AAV28_07135	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
exoB	nolK	AAV28_35570	AAV28_05055	UDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.	0.479
ndvA	ndvB	AAV28_03495	AAV28_20310	Cyclic beta-1,2-glucan ABC transporter; Involved in beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation (By similarity).	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
ndvB	ndvA	AAV28_20310	AAV28_03495	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cyclic beta-1,2-glucan ABC transporter; Involved in beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation (By similarity).	0.673
ndvB	ndvC	AAV28_20310	AAV28_20300	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-(1-6) glucans synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
ndvC	ndvB	AAV28_20300	AAV28_20310	Beta-(1-6) glucans synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
nodD1	AND87615.1	AAV28_06950	AAV28_07195	LysR family transcriptional regulator; NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers (By similarity).	NoeE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
nodD1	nodS	AAV28_06950	AAV28_06975	LysR family transcriptional regulator; NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers (By similarity).	SAM-dependent methlyltransferase; SAM-utilizing methyltransferase involved in nod factor synthesis.	0.540
nodD1	nodU	AAV28_06950	AAV28_06980	LysR family transcriptional regulator; NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers (By similarity).	Nodulation protein NodU; Involved in 6-O-carbamoylation of Nod-factors.	0.784
nodD1	nodZ	AAV28_06950	AAV28_07010	LysR family transcriptional regulator; NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers (By similarity).	Nodulation protein NodZ; Fucosyltransferase which adds the fucose moiety of the nod factor on its terminal reducing N-acetylglucosamine end. Uses GDP- fucose as the donor group.	0.734