(5 nodes) Intraciliary transport particle B network (Lottia gigantea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V3ZVG1_LOTGI	Uncharacterized protein. (818 aa)
	V3ZY28_LOTGI	Uncharacterized protein. (693 aa)
	V4B1Q1_LOTGI	WD_REPEATS_REGION domain-containing protein. (788 aa)
	V4CDF6_LOTGI	Uncharacterized protein. (392 aa)
	V4CNE9_LOTGI	Uncharacterized protein. (429 aa)

Your Current Organism:

Lottia gigantea

NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V3ZVG1_LOTGI	V3ZY28_LOTGI	V3ZVG1	V3ZY28	Uncharacterized protein.	Uncharacterized protein.	0.975
V3ZVG1_LOTGI	V4B1Q1_LOTGI	V3ZVG1	V4B1Q1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.990
V3ZVG1_LOTGI	V4CDF6_LOTGI	V3ZVG1	V4CDF6	Uncharacterized protein.	Uncharacterized protein.	0.990
V3ZVG1_LOTGI	V4CNE9_LOTGI	V3ZVG1	V4CNE9	Uncharacterized protein.	Uncharacterized protein.	0.989
V3ZY28_LOTGI	V3ZVG1_LOTGI	V3ZY28	V3ZVG1	Uncharacterized protein.	Uncharacterized protein.	0.975
V3ZY28_LOTGI	V4B1Q1_LOTGI	V3ZY28	V4B1Q1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.987
V3ZY28_LOTGI	V4CDF6_LOTGI	V3ZY28	V4CDF6	Uncharacterized protein.	Uncharacterized protein.	0.991
V3ZY28_LOTGI	V4CNE9_LOTGI	V3ZY28	V4CNE9	Uncharacterized protein.	Uncharacterized protein.	0.989
V4B1Q1_LOTGI	V3ZVG1_LOTGI	V4B1Q1	V3ZVG1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.990
V4B1Q1_LOTGI	V3ZY28_LOTGI	V4B1Q1	V3ZY28	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.987
V4B1Q1_LOTGI	V4CDF6_LOTGI	V4B1Q1	V4CDF6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.991
V4B1Q1_LOTGI	V4CNE9_LOTGI	V4B1Q1	V4CNE9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.988
V4CDF6_LOTGI	V3ZVG1_LOTGI	V4CDF6	V3ZVG1	Uncharacterized protein.	Uncharacterized protein.	0.990
V4CDF6_LOTGI	V3ZY28_LOTGI	V4CDF6	V3ZY28	Uncharacterized protein.	Uncharacterized protein.	0.991
V4CDF6_LOTGI	V4B1Q1_LOTGI	V4CDF6	V4B1Q1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.991
V4CDF6_LOTGI	V4CNE9_LOTGI	V4CDF6	V4CNE9	Uncharacterized protein.	Uncharacterized protein.	0.991
V4CNE9_LOTGI	V3ZVG1_LOTGI	V4CNE9	V3ZVG1	Uncharacterized protein.	Uncharacterized protein.	0.989
V4CNE9_LOTGI	V3ZY28_LOTGI	V4CNE9	V3ZY28	Uncharacterized protein.	Uncharacterized protein.	0.989
V4CNE9_LOTGI	V4B1Q1_LOTGI	V4CNE9	V4B1Q1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.988
V4CNE9_LOTGI	V4CDF6_LOTGI	V4CNE9	V4CDF6	Uncharacterized protein.	Uncharacterized protein.	0.991