(32 nodes) Ciliary transition zone network (Lottia gigantea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V3Z4X5_LOTGI	Uncharacterized protein. (146 aa)
	V3ZG18_LOTGI	Uncharacterized protein. (350 aa)
	V3ZHQ4_LOTGI	Uncharacterized protein. (167 aa)
	V3ZIT4_LOTGI	Uncharacterized protein. (206 aa)
	V3ZJY9_LOTGI	Uncharacterized protein. (352 aa)
	V3ZLA6_LOTGI	Uncharacterized protein. (261 aa)
	V4AEP7_LOTGI	LRRcap domain-containing protein. (132 aa)
	V3ZMG6_LOTGI	Uncharacterized protein. (261 aa)
	V3ZPK0_LOTGI	Uncharacterized protein. (138 aa)
	V4AP61_LOTGI	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (181 aa)
	V3ZYS5_LOTGI	C-CAP/cofactor C-like domain-containing protein. (318 aa)
	V3ZZC5_LOTGI	Uncharacterized protein. (312 aa)
	V4A036_LOTGI	Uncharacterized protein. (1295 aa)
	V4A442_LOTGI	Uncharacterized protein. (747 aa)
	V4A547_LOTGI	Uncharacterized protein. (175 aa)
	V4A683_LOTGI	Uncharacterized protein. (1329 aa)
	V3ZMC6_LOTGI	Uncharacterized protein. (1476 aa)
	V4AG79_LOTGI	Uncharacterized protein. (596 aa)
	V4AG81_LOTGI	Uncharacterized protein. (4922 aa)
	V4AGN2_LOTGI	PDZ domain-containing protein. (106 aa)
	V4AHM0_LOTGI	Uncharacterized protein. (436 aa)
	V4AMM8_LOTGI	Uncharacterized protein. (793 aa)
	V4C3E2_LOTGI	Uncharacterized protein. (551 aa)
	V4BYG1_LOTGI	TPR_REGION domain-containing protein. (501 aa)
	V4BX71_LOTGI	PCM1_C domain-containing protein. (2038 aa)
	V4BMK6_LOTGI	Uncharacterized protein. (335 aa)
	V4BLB8_LOTGI	Uncharacterized protein. (170 aa)
	V4BH35_LOTGI	RING-type domain-containing protein. (471 aa)
	V4BCN1_LOTGI	Uncharacterized protein. (428 aa)
	V4AUB9_LOTGI	Uncharacterized protein. (760 aa)
	V4ASP5_LOTGI	Uncharacterized protein. (560 aa)
	V3YZ72_LOTGI	Lebercilin domain-containing protein. (124 aa)

Your Current Organism:

Lottia gigantea

NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V3YZ72_LOTGI	V4AG81_LOTGI	V3YZ72	V4AG81	Lebercilin domain-containing protein.	Uncharacterized protein.	0.540
V3YZ72_LOTGI	V4BMK6_LOTGI	V3YZ72	V4BMK6	Lebercilin domain-containing protein.	Uncharacterized protein.	0.535
V3Z4X5_LOTGI	V3ZIT4_LOTGI	V3Z4X5	V3ZIT4	Uncharacterized protein.	Uncharacterized protein.	0.928
V3Z4X5_LOTGI	V3ZJY9_LOTGI	V3Z4X5	V3ZJY9	Uncharacterized protein.	Uncharacterized protein.	0.606
V3Z4X5_LOTGI	V3ZPK0_LOTGI	V3Z4X5	V3ZPK0	Uncharacterized protein.	Uncharacterized protein.	0.559
V3Z4X5_LOTGI	V3ZZC5_LOTGI	V3Z4X5	V3ZZC5	Uncharacterized protein.	Uncharacterized protein.	0.673
V3Z4X5_LOTGI	V4A036_LOTGI	V3Z4X5	V4A036	Uncharacterized protein.	Uncharacterized protein.	0.928
V3Z4X5_LOTGI	V4A442_LOTGI	V3Z4X5	V4A442	Uncharacterized protein.	Uncharacterized protein.	0.930
V3Z4X5_LOTGI	V4A547_LOTGI	V3Z4X5	V4A547	Uncharacterized protein.	Uncharacterized protein.	0.897
V3Z4X5_LOTGI	V4A683_LOTGI	V3Z4X5	V4A683	Uncharacterized protein.	Uncharacterized protein.	0.596
V3Z4X5_LOTGI	V4AHM0_LOTGI	V3Z4X5	V4AHM0	Uncharacterized protein.	Uncharacterized protein.	0.534
V3Z4X5_LOTGI	V4AMM8_LOTGI	V3Z4X5	V4AMM8	Uncharacterized protein.	Uncharacterized protein.	0.899
V3Z4X5_LOTGI	V4ASP5_LOTGI	V3Z4X5	V4ASP5	Uncharacterized protein.	Uncharacterized protein.	0.897
V3ZG18_LOTGI	V3ZMC6_LOTGI	V3ZG18	V3ZMC6	Uncharacterized protein.	Uncharacterized protein.	0.796
V3ZG18_LOTGI	V4AUB9_LOTGI	V3ZG18	V4AUB9	Uncharacterized protein.	Uncharacterized protein.	0.779
V3ZG18_LOTGI	V4BCN1_LOTGI	V3ZG18	V4BCN1	Uncharacterized protein.	Uncharacterized protein.	0.812
V3ZHQ4_LOTGI	V3ZMC6_LOTGI	V3ZHQ4	V3ZMC6	Uncharacterized protein.	Uncharacterized protein.	0.540
V3ZIT4_LOTGI	V3Z4X5_LOTGI	V3ZIT4	V3Z4X5	Uncharacterized protein.	Uncharacterized protein.	0.928
V3ZIT4_LOTGI	V3ZJY9_LOTGI	V3ZIT4	V3ZJY9	Uncharacterized protein.	Uncharacterized protein.	0.540
V3ZIT4_LOTGI	V3ZMC6_LOTGI	V3ZIT4	V3ZMC6	Uncharacterized protein.	Uncharacterized protein.	0.418