(39 nodes) Zinc finger, NHR/GATA-type network (Lottia gigantea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V3YXI5_LOTGI	Uncharacterized protein. (343 aa)
	V3Z0C1_LOTGI	Uncharacterized protein. (484 aa)
	V3Z6R0_LOTGI	Nuclear receptor domain-containing protein. (76 aa)
	V3Z6X3_LOTGI	Uncharacterized protein. (426 aa)
	V3ZD78_LOTGI	Uncharacterized protein. (343 aa)
	V3ZDF9_LOTGI	Uncharacterized protein. (469 aa)
	V3ZGH6_LOTGI	Nuclear receptor domain-containing protein. (110 aa)
	V3ZHN1_LOTGI	Uncharacterized protein. (230 aa)
	V3ZIY0_LOTGI	Nuclear receptor domain-containing protein. (74 aa)
	V3ZMC2_LOTGI	Nuclear receptor domain-containing protein. (195 aa)
	V3ZNC9_LOTGI	Uncharacterized protein. (416 aa)
	V3ZNZ7_LOTGI	Uncharacterized protein. (111 aa)
	V3ZPJ6_LOTGI	Nuclear receptor domain-containing protein. (83 aa)
	V3ZPP5_LOTGI	Uncharacterized protein. (368 aa)
	V3ZTY8_LOTGI	Uncharacterized protein. (139 aa)
	V3ZU79_LOTGI	Nuclear receptor domain-containing protein. (75 aa)
	V3ZV75_LOTGI	NR LBD domain-containing protein. (302 aa)
	V3ZW90_LOTGI	Uncharacterized protein. (118 aa)
	V3ZYI4_LOTGI	Uncharacterized protein. (119 aa)
	V3ZZL4_LOTGI	Uncharacterized protein. (407 aa)
	V4A6N6_LOTGI	Nuclear receptor domain-containing protein. (92 aa)
	V4A7U7_LOTGI	Uncharacterized protein. (391 aa)
	V4AAQ0_LOTGI	Uncharacterized protein. (378 aa)
	V4ACP2_LOTGI	Nuclear receptor domain-containing protein. (63 aa)
	V4AE14_LOTGI	Uncharacterized protein. (367 aa)
	V4AHL7_LOTGI	Uncharacterized protein. (359 aa)
	V4AJF3_LOTGI	Uncharacterized protein. (354 aa)
	V4AT68_LOTGI	Nuclear receptor domain-containing protein. (91 aa)
	V4AY65_LOTGI	Uncharacterized protein. (370 aa)
	V4B1N8_LOTGI	Uncharacterized protein. (344 aa)
	V4B6N7_LOTGI	Uncharacterized protein. (404 aa)
	V4B7B3_LOTGI	Uncharacterized protein. (151 aa)
	V4B9S4_LOTGI	Uncharacterized protein. (349 aa)
	V4BA16_LOTGI	Nuclear receptor domain-containing protein. (93 aa)
	V4BB99_LOTGI	Uncharacterized protein. (370 aa)
	V4BV24_LOTGI	Uncharacterized protein. (359 aa)
	V4CCR0_LOTGI	Uncharacterized protein. (155 aa)
	V4CFN8_LOTGI	Uncharacterized protein. (365 aa)
	V4CGF1_LOTGI	Nuclear receptor domain-containing protein. (53 aa)

Your Current Organism:

Lottia gigantea

NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V3Z0C1_LOTGI	V3ZDF9_LOTGI	V3Z0C1	V3ZDF9	Uncharacterized protein.	Uncharacterized protein.	0.531
V3Z0C1_LOTGI	V3ZPP5_LOTGI	V3Z0C1	V3ZPP5	Uncharacterized protein.	Uncharacterized protein.	0.521
V3Z0C1_LOTGI	V3ZV75_LOTGI	V3Z0C1	V3ZV75	Uncharacterized protein.	NR LBD domain-containing protein.	0.408
V3Z0C1_LOTGI	V3ZW90_LOTGI	V3Z0C1	V3ZW90	Uncharacterized protein.	Uncharacterized protein.	0.600
V3Z0C1_LOTGI	V4ACP2_LOTGI	V3Z0C1	V4ACP2	Uncharacterized protein.	Nuclear receptor domain-containing protein.	0.413
V3ZDF9_LOTGI	V3Z0C1_LOTGI	V3ZDF9	V3Z0C1	Uncharacterized protein.	Uncharacterized protein.	0.531
V3ZDF9_LOTGI	V4AHL7_LOTGI	V3ZDF9	V4AHL7	Uncharacterized protein.	Uncharacterized protein.	0.998
V3ZDF9_LOTGI	V4AJF3_LOTGI	V3ZDF9	V4AJF3	Uncharacterized protein.	Uncharacterized protein.	0.899
V3ZIY0_LOTGI	V4CGF1_LOTGI	V3ZIY0	V4CGF1	Nuclear receptor domain-containing protein.	Nuclear receptor domain-containing protein.	0.531
V3ZNZ7_LOTGI	V3ZW90_LOTGI	V3ZNZ7	V3ZW90	Uncharacterized protein.	Uncharacterized protein.	0.507
V3ZPP5_LOTGI	V3Z0C1_LOTGI	V3ZPP5	V3Z0C1	Uncharacterized protein.	Uncharacterized protein.	0.521
V3ZPP5_LOTGI	V3ZW90_LOTGI	V3ZPP5	V3ZW90	Uncharacterized protein.	Uncharacterized protein.	0.695
V3ZTY8_LOTGI	V3ZW90_LOTGI	V3ZTY8	V3ZW90	Uncharacterized protein.	Uncharacterized protein.	0.506
V3ZV75_LOTGI	V3Z0C1_LOTGI	V3ZV75	V3Z0C1	NR LBD domain-containing protein.	Uncharacterized protein.	0.408
V3ZV75_LOTGI	V4AHL7_LOTGI	V3ZV75	V4AHL7	NR LBD domain-containing protein.	Uncharacterized protein.	0.806
V3ZV75_LOTGI	V4AJF3_LOTGI	V3ZV75	V4AJF3	NR LBD domain-containing protein.	Uncharacterized protein.	0.806
V3ZW90_LOTGI	V3Z0C1_LOTGI	V3ZW90	V3Z0C1	Uncharacterized protein.	Uncharacterized protein.	0.600
V3ZW90_LOTGI	V3ZNZ7_LOTGI	V3ZW90	V3ZNZ7	Uncharacterized protein.	Uncharacterized protein.	0.507
V3ZW90_LOTGI	V3ZPP5_LOTGI	V3ZW90	V3ZPP5	Uncharacterized protein.	Uncharacterized protein.	0.695
V3ZW90_LOTGI	V3ZTY8_LOTGI	V3ZW90	V3ZTY8	Uncharacterized protein.	Uncharacterized protein.	0.506