(31 nodes) Nuclear hormone receptor-like domain superfamily network (Lottia gigantea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4AAQ0_LOTGI	Uncharacterized protein. (378 aa)
	V4AE14_LOTGI	Uncharacterized protein. (367 aa)
	V4CFN8_LOTGI	Uncharacterized protein. (365 aa)
	V4AFY5_LOTGI	NR LBD domain-containing protein. (383 aa)
	V4AHL7_LOTGI	Uncharacterized protein. (359 aa)
	V4AJF3_LOTGI	Uncharacterized protein. (354 aa)
	V4APU3_LOTGI	NR LBD domain-containing protein. (382 aa)
	V4AY65_LOTGI	Uncharacterized protein. (370 aa)
	V4B1N8_LOTGI	Uncharacterized protein. (344 aa)
	V4B4Z1_LOTGI	NR LBD domain-containing protein. (242 aa)
	V4B6N7_LOTGI	Uncharacterized protein. (404 aa)
	V4B9S4_LOTGI	Uncharacterized protein. (349 aa)
	V4BB99_LOTGI	Uncharacterized protein. (370 aa)
	V4BP31_LOTGI	NR LBD domain-containing protein. (207 aa)
	V4BV24_LOTGI	Uncharacterized protein. (359 aa)
	V4BR72_LOTGI	NR LBD domain-containing protein. (194 aa)
	V3YXI5_LOTGI	Uncharacterized protein. (343 aa)
	V3Z0C1_LOTGI	Uncharacterized protein. (484 aa)
	V3Z102_LOTGI	NR LBD domain-containing protein. (189 aa)
	V3Z6X3_LOTGI	Uncharacterized protein. (426 aa)
	V3ZD78_LOTGI	Uncharacterized protein. (343 aa)
	V3ZDF9_LOTGI	Uncharacterized protein. (469 aa)
	V3ZHN1_LOTGI	Uncharacterized protein. (230 aa)
	V3ZJR9_LOTGI	NR LBD domain-containing protein. (226 aa)
	V3ZNC9_LOTGI	Uncharacterized protein. (416 aa)
	V3ZPP5_LOTGI	Uncharacterized protein. (368 aa)
	V3ZV75_LOTGI	NR LBD domain-containing protein. (302 aa)
	V3ZZL4_LOTGI	Uncharacterized protein. (407 aa)
	V3ZZQ4_LOTGI	NR LBD domain-containing protein. (190 aa)
	V4A7T0_LOTGI	NR LBD domain-containing protein. (193 aa)
	V4A7U7_LOTGI	Uncharacterized protein. (391 aa)

Your Current Organism:

Lottia gigantea

NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V3Z0C1_LOTGI	V3ZDF9_LOTGI	V3Z0C1	V3ZDF9	Uncharacterized protein.	Uncharacterized protein.	0.531
V3Z0C1_LOTGI	V3ZPP5_LOTGI	V3Z0C1	V3ZPP5	Uncharacterized protein.	Uncharacterized protein.	0.521
V3Z0C1_LOTGI	V3ZV75_LOTGI	V3Z0C1	V3ZV75	Uncharacterized protein.	NR LBD domain-containing protein.	0.408
V3Z0C1_LOTGI	V3ZZQ4_LOTGI	V3Z0C1	V3ZZQ4	Uncharacterized protein.	NR LBD domain-containing protein.	0.435
V3Z0C1_LOTGI	V4A7T0_LOTGI	V3Z0C1	V4A7T0	Uncharacterized protein.	NR LBD domain-containing protein.	0.413
V3ZDF9_LOTGI	V3Z0C1_LOTGI	V3ZDF9	V3Z0C1	Uncharacterized protein.	Uncharacterized protein.	0.531
V3ZDF9_LOTGI	V4AHL7_LOTGI	V3ZDF9	V4AHL7	Uncharacterized protein.	Uncharacterized protein.	0.998
V3ZDF9_LOTGI	V4AJF3_LOTGI	V3ZDF9	V4AJF3	Uncharacterized protein.	Uncharacterized protein.	0.899
V3ZPP5_LOTGI	V3Z0C1_LOTGI	V3ZPP5	V3Z0C1	Uncharacterized protein.	Uncharacterized protein.	0.521
V3ZV75_LOTGI	V3Z0C1_LOTGI	V3ZV75	V3Z0C1	NR LBD domain-containing protein.	Uncharacterized protein.	0.408
V3ZV75_LOTGI	V4AHL7_LOTGI	V3ZV75	V4AHL7	NR LBD domain-containing protein.	Uncharacterized protein.	0.806
V3ZV75_LOTGI	V4AJF3_LOTGI	V3ZV75	V4AJF3	NR LBD domain-containing protein.	Uncharacterized protein.	0.806
V3ZZQ4_LOTGI	V3Z0C1_LOTGI	V3ZZQ4	V3Z0C1	NR LBD domain-containing protein.	Uncharacterized protein.	0.435
V3ZZQ4_LOTGI	V4AHL7_LOTGI	V3ZZQ4	V4AHL7	NR LBD domain-containing protein.	Uncharacterized protein.	0.912
V3ZZQ4_LOTGI	V4AJF3_LOTGI	V3ZZQ4	V4AJF3	NR LBD domain-containing protein.	Uncharacterized protein.	0.899
V4A7T0_LOTGI	V3Z0C1_LOTGI	V4A7T0	V3Z0C1	NR LBD domain-containing protein.	Uncharacterized protein.	0.413
V4A7T0_LOTGI	V4AHL7_LOTGI	V4A7T0	V4AHL7	NR LBD domain-containing protein.	Uncharacterized protein.	0.587
V4A7T0_LOTGI	V4AJF3_LOTGI	V4A7T0	V4AJF3	NR LBD domain-containing protein.	Uncharacterized protein.	0.587
V4AE14_LOTGI	V4AJF3_LOTGI	V4AE14	V4AJF3	Uncharacterized protein.	Uncharacterized protein.	0.476
V4AHL7_LOTGI	V3ZDF9_LOTGI	V4AHL7	V3ZDF9	Uncharacterized protein.	Uncharacterized protein.	0.998