STRINGSTRING
spoIIIE spoIIIE noc_1 noc_1 soj_1 soj_1 parB parB soj_2 soj_2 noc_2 noc_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
spoIIIEDNA translocase SpoIIIE. (794 aa)
noc_1Nucleoid occlusion protein; Belongs to the ParB family. (375 aa)
soj_1Sporulation initiation inhibitor protein Soj. (251 aa)
parBPutative chromosome-partitioning protein ParB; Belongs to the ParB family. (286 aa)
soj_2Sporulation initiation inhibitor protein Soj. (253 aa)
noc_2Nucleoid occlusion protein; Belongs to the ParB family. (260 aa)
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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