(34 nodes) Ubiquinone and other terpenoid-quinone biosynthesis network (Clostridium chromiireducens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OPJ62986.1	Iron-sulfur flavoprotein. (209 aa)
	OPJ66048.1	NADPH-dependent FMN reductase. (233 aa)
	OPJ65882.1	Iron-sulfur flavoprotein. (193 aa)
	OPJ65664.1	Iron-sulfur flavoprotein. (187 aa)
	ubiE_1	Demethylmenaquinone methyltransferase. (208 aa)
	sgcG_1	2-amino-4-deoxychorismate dehydrogenase. (316 aa)
	sgcG_2	2-amino-4-deoxychorismate dehydrogenase. (211 aa)
	sgcG_3	2-amino-4-deoxychorismate dehydrogenase. (210 aa)
	OPJ63331.1	Hypothetical protein; Transcriptional repressor SmtB homolog. (121 aa)
	OPJ63138.1	Putative universal stress protein. (143 aa)
	sdpR_1	Transcriptional repressor SdpR. (122 aa)
	sdpR_2	Transcriptional repressor SdpR. (107 aa)
	OPJ56656.1	Hypothetical protein. (216 aa)
	OPJ56657.1	Hypothetical protein. (170 aa)
	OPJ56528.1	23S rRNA methyltransferase A. (387 aa)
	tam_2	Trans-aconitate 2-methyltransferase. (466 aa)
	sdpR_3	Transcriptional repressor SdpR. (107 aa)
	ubiE_4	Demethylmenaquinone methyltransferase. (209 aa)
	OPJ54523.1	Bacterial regulatory protein, arsR family. (108 aa)
	sgcG_4	2-amino-4-deoxychorismate dehydrogenase. (215 aa)
	ycgJ_1	Putative methyltransferase YcgJ. (203 aa)
	OPJ62813.1	Iron-sulfur flavoprotein. (217 aa)
	mdaB	Modulator of drug activity B. (101 aa)
	OPJ62339.1	Putative S-adenosylmethionine-dependent methyltransferase. (209 aa)
	desVI	dTDP-3-amino-3,4, 6-trideoxy-alpha-D-glucopyranose. (245 aa)
	OPJ61617.1	HTH-type transcriptional regulator. (121 aa)
	cmoA	tRNA (cmo5U34)-methyltransferase. (216 aa)
	ubiE_3	Demethylmenaquinone methyltransferase. (201 aa)
	OPJ59828.1	NADPH-dependent FMN reductase. (123 aa)
	sgcG_5	2-amino-4-deoxychorismate dehydrogenase. (191 aa)
	ycgJ_2	Putative methyltransferase YcgJ. (268 aa)
	tipA	HTH-type transcriptional activator TipA. (399 aa)
	eryG	Erythromycin 3''-O-methyltransferase. (185 aa)
	OPJ58030.1	Hypothetical protein. (309 aa)

Your Current Organism:

Clostridium chromiireducens

NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OPJ56528.1	cmoA	CLCHR_45540	CLCHR_30900	23S rRNA methyltransferase A.	tRNA (cmo5U34)-methyltransferase.	0.432
OPJ56528.1	tipA	CLCHR_45540	CLCHR_38720	23S rRNA methyltransferase A.	HTH-type transcriptional activator TipA.	0.432
OPJ56528.1	ubiE_1	CLCHR_45540	CLCHR_10690	23S rRNA methyltransferase A.	Demethylmenaquinone methyltransferase.	0.432
OPJ56528.1	ubiE_3	CLCHR_45540	CLCHR_32610	23S rRNA methyltransferase A.	Demethylmenaquinone methyltransferase.	0.432
OPJ56528.1	ubiE_4	CLCHR_45540	CLCHR_47390	23S rRNA methyltransferase A.	Demethylmenaquinone methyltransferase.	0.432
OPJ56528.1	ycgJ_2	CLCHR_45540	CLCHR_37630	23S rRNA methyltransferase A.	Putative methyltransferase YcgJ.	0.432
OPJ56656.1	OPJ56657.1	CLCHR_45080	CLCHR_45090	Hypothetical protein.	Hypothetical protein.	0.958
OPJ56656.1	OPJ63138.1	CLCHR_45080	CLCHR_17330	Hypothetical protein.	Putative universal stress protein.	0.418
OPJ56656.1	mdaB	CLCHR_45080	CLCHR_19800	Hypothetical protein.	Modulator of drug activity B.	0.437
OPJ56657.1	OPJ56656.1	CLCHR_45090	CLCHR_45080	Hypothetical protein.	Hypothetical protein.	0.958
OPJ56657.1	OPJ63138.1	CLCHR_45090	CLCHR_17330	Hypothetical protein.	Putative universal stress protein.	0.418
OPJ56657.1	mdaB	CLCHR_45090	CLCHR_19800	Hypothetical protein.	Modulator of drug activity B.	0.437
OPJ59828.1	OPJ62813.1	CLCHR_32860	CLCHR_18730	NADPH-dependent FMN reductase.	Iron-sulfur flavoprotein.	0.756
OPJ59828.1	OPJ63138.1	CLCHR_32860	CLCHR_17330	NADPH-dependent FMN reductase.	Putative universal stress protein.	0.418
OPJ59828.1	OPJ65664.1	CLCHR_32860	CLCHR_06480	NADPH-dependent FMN reductase.	Iron-sulfur flavoprotein.	0.764
OPJ59828.1	OPJ65882.1	CLCHR_32860	CLCHR_02380	NADPH-dependent FMN reductase.	Iron-sulfur flavoprotein.	0.759
OPJ59828.1	mdaB	CLCHR_32860	CLCHR_19800	NADPH-dependent FMN reductase.	Modulator of drug activity B.	0.437
OPJ59828.1	sgcG_4	CLCHR_32860	CLCHR_18520	NADPH-dependent FMN reductase.	2-amino-4-deoxychorismate dehydrogenase.	0.749
OPJ62339.1	cmoA	CLCHR_20750	CLCHR_30900	Putative S-adenosylmethionine-dependent methyltransferase.	tRNA (cmo5U34)-methyltransferase.	0.432
OPJ62339.1	tipA	CLCHR_20750	CLCHR_38720	Putative S-adenosylmethionine-dependent methyltransferase.	HTH-type transcriptional activator TipA.	0.432