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rluC rluC ywpJ_1 ywpJ_1 mhqN_1 mhqN_1 OPJ65671.1 OPJ65671.1 fbiB_1 fbiB_1 flr_1 flr_1 ribF ribF OPJ65289.1 OPJ65289.1 rnmV rnmV ybjI ybjI OPJ64301.1 OPJ64301.1 nfrA2_1 nfrA2_1 yidA_1 yidA_1 flr_2 flr_2 OPJ63313.1 OPJ63313.1 yidA_2 yidA_2 fbiB_2 fbiB_2 OPJ62334.1 OPJ62334.1 OPJ62369.1 OPJ62369.1 ydjA ydjA nfrA2_2 nfrA2_2 rluD_1 rluD_1 OPJ61385.1 OPJ61385.1 frp frp flr_4 flr_4 OPJ59809.1 OPJ59809.1 flr_6 flr_6 flr_7 flr_7 OPJ59749.1 OPJ59749.1 flr_8 flr_8 flr_9 flr_9 OPJ59135.1 OPJ59135.1 rluD_2 rluD_2 azr azr ywpJ_2 ywpJ_2 ywpJ_3 ywpJ_3 yidA_3 yidA_3 rutE rutE ribH ribH ribBA ribBA ribE ribE ribD ribD OPJ56649.1 OPJ56649.1 OPJ56596.1 OPJ56596.1 ywpJ_4 ywpJ_4 mhqN_2 mhqN_2 OPJ54732.1 OPJ54732.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rluCRibosomal large subunit pseudouridine synthase C; Belongs to the pseudouridine synthase RluA family. (324 aa)
ywpJ_1Putative phosphatase YwpJ. (288 aa)
mhqN_1Putative NAD(P)H nitroreductase MhqN. (205 aa)
OPJ65671.1Ferredoxin. (273 aa)
fbiB_1Coenzyme F420:L-glutamate ligase. (187 aa)
flr_1Flavoredoxin. (191 aa)
ribFRiboflavin biosynthesis protein RibF; Belongs to the ribF family. (308 aa)
OPJ65289.1Putative NAD(P)H nitroreductase. (178 aa)
rnmVRibonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. (191 aa)
ybjIFlavin mononucleotide phosphatase YbjI. (65 aa)
OPJ64301.1Ferredoxin-2. (264 aa)
nfrA2_1FMN reductase; Belongs to the flavin oxidoreductase frp family. (246 aa)
yidA_1Sugar phosphatase YidA. (267 aa)
flr_2Flavoredoxin. (201 aa)
OPJ63313.1Nitroreductase A. (176 aa)
yidA_2Sugar phosphatase YidA. (261 aa)
fbiB_2Coenzyme F420:L-glutamate ligase. (184 aa)
OPJ62334.1Malonic semialdehyde reductase. (279 aa)
OPJ62369.1Putative phosphatase. (268 aa)
ydjAPutative NAD(P)H nitroreductase YdjA. (184 aa)
nfrA2_2FMN reductase. (186 aa)
rluD_1Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (305 aa)
OPJ61385.1Malonic semialdehyde reductase. (235 aa)
frpNADPH-flavin oxidoreductase. (173 aa)
flr_4Flavoredoxin. (187 aa)
OPJ59809.1Ferredoxin. (270 aa)
flr_6Flavoredoxin. (190 aa)
flr_7Flavoredoxin. (190 aa)
OPJ59749.1Putative bifunctional phosphatase/peptidyl-prolyl cis-trans isomerase. (261 aa)
flr_8Flavoredoxin. (186 aa)
flr_9Flavoredoxin. (189 aa)
OPJ59135.1Nitroreductase family protein. (253 aa)
rluD_2Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (300 aa)
azrNADPH azoreductase. (199 aa)
ywpJ_2Putative phosphatase YwpJ. (289 aa)
ywpJ_3Putative phosphatase YwpJ. (288 aa)
yidA_3Sugar phosphatase YidA. (268 aa)
rutEMalonic semialdehyde reductase RutE. (182 aa)
ribH6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. (154 aa)
ribBARiboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. (397 aa)
ribERiboflavin synthase. (217 aa)
ribDRiboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (358 aa)
OPJ56649.1Putative phosphatase. (267 aa)
OPJ56596.1Putative bifunctional phosphatase/peptidyl-prolyl cis-trans isomerase. (262 aa)
ywpJ_4Putative phosphatase YwpJ. (262 aa)
mhqN_2Putative NAD(P)H nitroreductase MhqN. (206 aa)
OPJ54732.1Nitroreductase family protein. (80 aa)
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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