STRINGSTRING
Sps_00220 Sps_00220 Sps_01364 Sps_01364 Sps_01974 Sps_01974 Sps_01975 Sps_01975 Sps_01976 Sps_01976 Sps_01977 Sps_01977 Sps_02163 Sps_02163 Sps_02184 Sps_02184 Sps_02185 Sps_02185 Sps_02186 Sps_02186 Sps_02187 Sps_02187 Sps_02188 Sps_02188 Sps_04179 Sps_04179
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00220Polyketide synthase family protein; 'PFAM: Phosphopantetheine attachment site; Acyl transferase domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain'. (977 aa)
Sps_01364PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase. (308 aa)
Sps_01974Nucleoside-diphosphate-sugar epimerase; PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase family. (358 aa)
Sps_01975acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: AMP-binding enzyme. (587 aa)
Sps_01976Putative hydrolase or acyltransferase of alpha/beta superfamily; PFAM: Alpha/beta hydrolase family. (295 aa)
Sps_01977PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III. (349 aa)
Sps_02163PFAM: 4'-phosphopantetheinyl transferase superfamily; TIGRFAM: phosphopantetheine--protein transferase domain; Belongs to the P-Pant transferase superfamily. (287 aa)
Sps_02184Hypothetical protein; 'PFAM: Phosphopantetheine attachment site; Acyl transferase domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain'; TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA. (1492 aa)
Sps_02185Hypothetical protein; PFAM: Phosphopantetheine attachment site; Polyketide synthase dehydratase; KR domain; TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA. (1264 aa)
Sps_02186TIGRFAM: PfaB family protein. (771 aa)
Sps_02187'PFAM: FabA-like domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain'; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (1960 aa)
Sps_02188PfaD family protein; PFAM: Nitronate monooxygenase; TIGRFAM: PfaD family protein. (542 aa)
Sps_04179PFAM: Thioesterase-like superfamily; 'TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family'. (156 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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