STRINGSTRING
Sps_00526 Sps_00526 Sps_00893 Sps_00893 Sps_02555 Sps_02555 Sps_02556 Sps_02556 Sps_02557 Sps_02557 potA potA Sps_02559 Sps_02559 Sps_02560 Sps_02560 Sps_02561 Sps_02561 Sps_02562 Sps_02562 Sps_02563 Sps_02563 Sps_02564 Sps_02564
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00526glycine/D-amino acid oxidase, deaminating; PFAM: FAD dependent oxidoreductase. (429 aa)
Sps_00893Spermidine/putrescine-binding periplasmic protein; PFAM: Bacterial extracellular solute-binding protein. (384 aa)
Sps_02555Gamma-glutamylputrescine oxidase; PFAM: FAD dependent oxidoreductase. (428 aa)
Sps_02556ABC-type spermidine/putrescine transport system, permease component II; PFAM: Binding-protein-dependent transport system inner membrane component. (274 aa)
Sps_02557ABC-type spermidine/putrescine transport system, permease component I; PFAM: Binding-protein-dependent transport system inner membrane component. (301 aa)
potASpermidine/putrescine ABC transporter ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (378 aa)
Sps_02559Spermidine/putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. (366 aa)
Sps_02560'PFAM: Glutamine synthetase, catalytic domain'. (449 aa)
Sps_02561Gamma-glutamyl-gamma-aminobutyrate hydrolase; PFAM: Peptidase C26. (253 aa)
Sps_02562Transcriptional regulator, XRE family with cupin sensor; PFAM: Cupin domain; Helix-turn-helix. (182 aa)
Sps_02563Gamma-glutamylputrescine oxidase; PFAM: FAD dependent oxidoreductase. (435 aa)
Sps_02564PFAM: Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family. (503 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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