STRINGSTRING
Sps_00038 Sps_00038 Sps_00039 Sps_00039 Sps_00040 Sps_00040 Sps_00041 Sps_00041 Sps_02530 Sps_02530 Sps_02531 Sps_02531 Sps_02532 Sps_02532 Sps_02533 Sps_02533 Sps_02534 Sps_02534 Sps_02535 Sps_02535 Sps_02949 Sps_02949 Sps_02950 Sps_02950 Sps_02951 Sps_02951 Sps_02952 Sps_02952 Sps_02953 Sps_02953
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00038PFAM: Cytochrome c. (111 aa)
Sps_00039Sulfite oxidase-like oxidoreductase; PFAM: Mo-co oxidoreductase dimerisation domain; Oxidoreductase molybdopterin binding domain. (408 aa)
Sps_00040Hypothetical protein. (143 aa)
Sps_00041PFAM: Cytochrome c. (116 aa)
Sps_02530PFAM: Integral membrane protein TerC family. (247 aa)
Sps_02531Putative membrane-associated protein; PFAM: SNARE associated Golgi protein. (218 aa)
Sps_02532PFAM: Cytochrome c. (110 aa)
Sps_02533Sulfite dehydrogenase (cytochrome) subunit SorA apoprotein; PFAM: Mo-co oxidoreductase dimerisation domain; Oxidoreductase molybdopterin binding domain. (408 aa)
Sps_02534Sulfite dehydrogenase (cytochrome) subunit SorB. (125 aa)
Sps_02535PFAM: Cytochrome c. (135 aa)
Sps_02949PFAM: Cysteine-rich CWC. (75 aa)
Sps_02950Hypothetical protein; PFAM: Glutathione-dependent formaldehyde-activating enzyme. (140 aa)
Sps_02951PFAM: Cytochrome c. (355 aa)
Sps_02952PFAM: Cytochrome c. (177 aa)
Sps_02953Transposase, IS4 family; PFAM: Transposase DDE domain. (305 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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