STRINGSTRING
Sps_00059 Sps_00059 Sps_00688 Sps_00688 Sps_00689 Sps_00689 Sps_02114 Sps_02114 Sps_02328 Sps_02328 rimK rimK Sps_02920 Sps_02920 Sps_03149 Sps_03149 Sps_04037 Sps_04037 Sps_04038 Sps_04038 Sps_05296 Sps_05296
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00059Potassium uptake protein, TrkH family; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. (472 aa)
Sps_00688K+ transport system, NAD-binding component; PFAM: TrkA-N domain. (220 aa)
Sps_00689PFAM: Cation transport protein; 'TIGRFAM: potassium uptake protein, TrkH family'. (455 aa)
Sps_02114Kef-type potassium/proton antiporter, CPA2 family; PFAM: TrkA-N domain; TrkA-C domain; Sodium/hydrogen exchanger family; 'TIGRFAM: transporter, monovalent cation:proton antiporter-2 (CPA2) family'; TC 2.A.37.1. (638 aa)
Sps_02328PFAM: Mechanosensitive ion channel; Conserved TM helix. (280 aa)
rimKSSU ribosomal protein S6P modification protein; PFAM: RimK-like ATP-grasp domain; Putative ATP-dependant zinc protease; 'TIGRFAM: alpha-L-glutamate ligase, RimK family'; Belongs to the RimK family. (464 aa)
Sps_02920Transporter, CPA2 family; PFAM: TrkA-N domain; Sodium/hydrogen exchanger family; TC 2.A.37; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. (541 aa)
Sps_03149Hypothetical protein; PFAM: Mechanosensitive ion channel; Conserved TM helix. (277 aa)
Sps_04037Kef-type potassium/proton antiporter accessory protein, CPA2 family; PFAM: Flavodoxin-like fold; TC 2.A.37.1. (207 aa)
Sps_04038Kef-type potassium/proton antiporter, CPA2 family; PFAM: TrkA-N domain; Sodium/hydrogen exchanger family; 'TIGRFAM: transporter, monovalent cation:proton antiporter-2 (CPA2) family'; TC 2.A.37.1. (641 aa)
Sps_05296PFAM: Mechanosensitive ion channel. (534 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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