STRINGSTRING
Sps_00466 Sps_00466 Sps_00616 Sps_00616 Sps_00617 Sps_00617 Sps_00736 Sps_00736 Sps_00737 Sps_00737 Sps_00738 Sps_00738 Sps_00739 Sps_00739 Sps_02078 Sps_02078 Sps_02079 Sps_02079 Sps_02543 Sps_02543 Sps_03008 Sps_03008 Sps_05223 Sps_05223
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00466Ykud domain-containing protein; 'PFAM: L,D-transpeptidase catalytic domain'. (179 aa)
Sps_00616'PFAM: Putative peptidoglycan binding domain; L,D-transpeptidase catalytic domain'. (466 aa)
Sps_00617PFAM: Bacterial protein of unknown function (DUF882). (172 aa)
Sps_00736Arylsulfatase A family protein; PFAM: Sulfatase. (678 aa)
Sps_00737Hypothetical protein. (98 aa)
Sps_00738'PFAM: Putative peptidoglycan binding domain; L,D-transpeptidase catalytic domain'. (494 aa)
Sps_00739Transposase; PFAM: Winged helix-turn helix. (141 aa)
Sps_02078Hypothetical protein; PFAM: Putative peptidoglycan binding domain. (325 aa)
Sps_02079Hypothetical protein; 'PFAM: L,D-transpeptidase catalytic domain'. (328 aa)
Sps_02543Hypothetical protein; 'PFAM: LysM domain; L,D-transpeptidase catalytic domain'. (300 aa)
Sps_03008Murein endopeptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. (297 aa)
Sps_05223PFAM: PAP2 superfamily. (271 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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