STRINGSTRING
Sps_00070 Sps_00070 Sps_00615 Sps_00615 Sps_01219 Sps_01219 Sps_01220 Sps_01220 Sps_01221 Sps_01221 Sps_01862 Sps_01862 Sps_02090 Sps_02090 Sps_02338 Sps_02338 Sps_02339 Sps_02339 Sps_02375 Sps_02375 Sps_02376 Sps_02376 Sps_02377 Sps_02377 Sps_02378 Sps_02378 Sps_02379 Sps_02379 Sps_02380 Sps_02380 Sps_02381 Sps_02381 Sps_02382 Sps_02382 Sps_02527 Sps_02527 Sps_02528 Sps_02528 Sps_02945 Sps_02945 csrA csrA Sps_04829 Sps_04829 Sps_04830 Sps_04830 Sps_04831 Sps_04831 Sps_04832 Sps_04832 Sps_04833 Sps_04833 Sps_04834 Sps_04834 Sps_04835 Sps_04835 Sps_04836 Sps_04836 Sps_04837 Sps_04837 Sps_04838 Sps_04838 Sps_04861 Sps_04861 Sps_04862 Sps_04862 Sps_04918 Sps_04918 Sps_05340 Sps_05340 Sps_05341 Sps_05341 Sps_05342 Sps_05342 Sps_05343 Sps_05343 Sps_05344 Sps_05344 Sps_05345 Sps_05345 Sps_05347 Sps_05347 Sps_05348 Sps_05348 Sps_05349 Sps_05349 Sps_05350 Sps_05350 Sps_05351 Sps_05351 Sps_05352 Sps_05352 Sps_05353 Sps_05353 Sps_05354 Sps_05354 Sps_05355 Sps_05355 Sps_05356 Sps_05356 Sps_05357 Sps_05357 Sps_05358 Sps_05358 Sps_05359 Sps_05359 Sps_05384 Sps_05384 Sps_05385 Sps_05385 Sps_05386 Sps_05386 Sps_05387 Sps_05387 Sps_05412 Sps_05412 Sps_05413 Sps_05413 Sps_05414 Sps_05414 Sps_05415 Sps_05415 Sps_05416 Sps_05416 Sps_05445 Sps_05445 Sps_05446 Sps_05446 Sps_05447 Sps_05447 Sps_05448 Sps_05448 Sps_05449 Sps_05449 Sps_05450 Sps_05450 Sps_05451 Sps_05451 Sps_05452 Sps_05452 Sps_05453 Sps_05453 Sps_05454 Sps_05454 Sps_05455 Sps_05455 Sps_05456 Sps_05456
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00070LysM domain-containing protein; PFAM: LysM domain. (362 aa)
Sps_00615PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (187 aa)
Sps_01219PFAM: ATPase family associated with various cellular activities (AAA). (303 aa)
Sps_01220PFAM: Protein of unknown function DUF58. (333 aa)
Sps_01221Transglutaminase-like enzyme, predicted cysteine protease; PFAM: Transglutaminase-like superfamily; Domain of unknown function (DUF3488). (670 aa)
Sps_01862PFAM: Helix-hairpin-helix motif; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region; comEA protein. (105 aa)
Sps_02090PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (188 aa)
Sps_02338PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT. (370 aa)
Sps_02339Pilus retraction ATPase PilT; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT. (345 aa)
Sps_02375PFAM: Type II transport protein GspH; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (169 aa)
Sps_02376PFAM: Type IV pilin N-term methylation site GFxxxE; Type II transport protein GspH; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (168 aa)
Sps_02377Hypothetical protein. (105 aa)
Sps_02378PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (129 aa)
Sps_02379PFAM: Neisseria PilC beta-propeller domain; von Willebrand factor type A domain. (1171 aa)
Sps_02380PFAM: PilX N-terminal. (143 aa)
Sps_02381TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (327 aa)
Sps_02382TIGRFAM: type IV pilus modification protein PilV; prepilin-type N-terminal cleavage/methylation domain. (183 aa)
Sps_02527Hypothetical protein. (253 aa)
Sps_02528PFAM: Voltage gated chloride channel. (569 aa)
Sps_02945Penicillin V acylase-like amidase; 'PFAM: Linear amide C-N hydrolases, choloylglycine hydrolase family'. (349 aa)
csrACarbon storage regulator, CsrA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). (65 aa)
Sps_04829Type II secretory pathway, component PulF; 'PFAM: Type II secretion system (T2SS), protein F'. (340 aa)
Sps_04830PFAM: Type II/IV secretion system protein. (323 aa)
Sps_04831Hypothetical protein. (167 aa)
Sps_04832Hypothetical protein. (161 aa)
Sps_04833Hypothetical protein. (267 aa)
Sps_04834Hypothetical protein. (165 aa)
Sps_04835PFAM: Bacterial type II and III secretion system protein. (473 aa)
Sps_04836PFAM: Toxin co-regulated pilus biosynthesis protein Q. (121 aa)
Sps_04837TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (461 aa)
Sps_04838Hypothetical protein. (206 aa)
Sps_04861PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (192 aa)
Sps_04862PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (174 aa)
Sps_04918PFAM: Ion channel. (327 aa)
Sps_05340PA14 domain-containing protein; PFAM: PA14 domain. (1434 aa)
Sps_05341Hypothetical protein. (150 aa)
Sps_05342TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (279 aa)
Sps_05343PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (192 aa)
Sps_05344TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (151 aa)
Sps_05345PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (173 aa)
Sps_05347PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (166 aa)
Sps_05348PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (171 aa)
Sps_05349PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (225 aa)
Sps_05350Hypothetical protein. (173 aa)
Sps_05351Type II secretory pathway, component PulF; 'PFAM: Type II secretion system (T2SS), protein F'. (406 aa)
Sps_05352Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; 'PFAM: Type II secretion system (T2SS), protein E, N-terminal domain; Type II/IV secretion system protein'. (581 aa)
Sps_05353Hypothetical protein. (402 aa)
Sps_05354Type II secretory pathway, component ExeA (predicted ATPase); PFAM: AAA domain. (302 aa)
Sps_05355MSHA-type pilus biogenesis protein MshL; PFAM: Secretin N-terminal domain; Secretin and TonB N terminus short domain; Bacterial type II and III secretion system protein; TIGRFAM: pilus (MSHA type) biogenesis protein MshL. (564 aa)
Sps_05356PFAM: Type IV pilus biogenesis. (109 aa)
Sps_05357Hypothetical protein. (218 aa)
Sps_05358PFAM: Fimbrial assembly protein (PilN). (201 aa)
Sps_05359Hypothetical protein. (316 aa)
Sps_05384PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (141 aa)
Sps_05385Type IV-A pilus assembly ATPase PilB; 'PFAM: Type II secretion system (T2SS), protein E, N-terminal domain; Type II/IV secretion system protein'; TIGRFAM: type IV-A pilus assembly ATPase PilB. (569 aa)
Sps_05386Type II secretory pathway, component PulF; 'PFAM: Type II secretion system (T2SS), protein F'. (424 aa)
Sps_05387Type 4 prepilin peptidase 1; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (303 aa)
Sps_05412Type IV pilus secretin PilQ/competence protein; PFAM: Bacterial type II/III secretion system short domain; Secretin and TonB N terminus short domain; Bacterial type II and III secretion system protein; TIGRFAM: type IV pilus secretin (or competence protein) PilQ. (681 aa)
Sps_05413'PFAM: Pilus assembly protein, PilP'. (172 aa)
Sps_05414'PFAM: Pilus assembly protein, PilO'. (205 aa)
Sps_05415PFAM: Fimbrial assembly protein (PilN). (191 aa)
Sps_05416PFAM: Type IV pilus assembly protein PilM; TIGRFAM: type IV pilus assembly protein PilM. (347 aa)
Sps_05445'PFAM: Type II secretion system (T2SS), protein N'. (253 aa)
Sps_05446Type II secretory pathway, component PulM; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (158 aa)
Sps_05447Type II secretion system protein L (GspL); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (397 aa)
Sps_05448Type II secretory pathway, component PulK; 'PFAM: Type II secretion system (T2SS), protein K'. (335 aa)
Sps_05449'PFAM: Type II secretion system (T2SS), protein J; Type IV pilin N-term methylation site GFxxxE'; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; type II secretion system protein J. (256 aa)
Sps_05450'PFAM: Prokaryotic N-terminal methylation motif; Type II secretion system (T2SS), protein I'; TIGRFAM: type II secretion system protein I; prepilin-type N-terminal cleavage/methylation domain. (136 aa)
Sps_05451PFAM: Type II transport protein GspH; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; type II secretion system protein H. (198 aa)
Sps_05452'PFAM: Type IV pilin N-term methylation site GFxxxE; Type II secretion system (T2SS), protein G'; TIGRFAM: type II secretion system protein G; prepilin-type N-terminal cleavage/methylation domain. (144 aa)
Sps_05453'PFAM: Type II secretion system (T2SS), protein F'; TIGRFAM: type II secretion system protein F. (407 aa)
Sps_05454Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (527 aa)
Sps_05455PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein; TIGRFAM: type II secretion system protein D. (721 aa)
Sps_05456PFAM: Type IV pilus biogenesis; TIGRFAM: type II secretion system protein C. (302 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.