STRINGSTRING
Sps_04831 Sps_04831 Sps_04832 Sps_04832 Sps_04833 Sps_04833 Sps_04834 Sps_04834 Sps_04835 Sps_04835 Sps_04836 Sps_04836 Sps_04837 Sps_04837
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_04831Hypothetical protein. (167 aa)
Sps_04832Hypothetical protein. (161 aa)
Sps_04833Hypothetical protein. (267 aa)
Sps_04834Hypothetical protein. (165 aa)
Sps_04835PFAM: Bacterial type II and III secretion system protein. (473 aa)
Sps_04836PFAM: Toxin co-regulated pilus biosynthesis protein Q. (121 aa)
Sps_04837TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (461 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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