STRINGSTRING
Sps_00428 Sps_00428 Sps_00429 Sps_00429 Sps_01941 Sps_01941 Sps_01942 Sps_01942 Sps_01943 Sps_01943 Sps_01944 Sps_01944 Sps_04423 Sps_04423 Sps_04424 Sps_04424 Sps_04425 Sps_04425 Sps_05291 Sps_05291 Sps_05292 Sps_05292 Sps_05293 Sps_05293
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00428Mg/Co/Ni transporter MgtE with CBS domain; PFAM: Divalent cation transporter; TIGRFAM: Mg2+ transporter (mgtE). (426 aa)
Sps_00429Hypothetical protein. (269 aa)
Sps_01941ABC-type metal ion transport system, periplasmic component/surface adhesin; PFAM: Periplasmic solute binding protein family; Belongs to the bacterial solute-binding protein 9 family. (297 aa)
Sps_01942ATPase component of Mn/Zn ABC-type transporter; PFAM: ABC transporter. (287 aa)
Sps_01943ABC-type Mn2+/Zn2+ transport system, permease component; PFAM: ABC 3 transport family. (309 aa)
Sps_01944ABC-type Mn2+/Zn2+ transport system, permease component; PFAM: ABC 3 transport family. (312 aa)
Sps_04423Mn2+/Fe2_ transporter, NRAMP family. (431 aa)
Sps_04424PFAM: Beta-lactamase. (498 aa)
Sps_04425PFAM: Protein of unknown function (DUF1456). (154 aa)
Sps_05291ABC-type Mn2+/Zn2+ transport system, permease component; PFAM: ABC 3 transport family. (265 aa)
Sps_05292ABC-type metal ion transport system, periplasmic component/surface adhesin; PFAM: Periplasmic solute binding protein family. (304 aa)
Sps_05293Hypothetical protein. (405 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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