STRINGSTRING
Sps_00284 Sps_00284 Sps_00285 Sps_00285 Sps_00286 Sps_00286 Sps_00287 Sps_00287 Sps_00288 Sps_00288 Sps_00418 Sps_00418 Sps_00464 Sps_00464 Sps_00542 Sps_00542 Sps_00957 Sps_00957 Sps_01846 Sps_01846 Sps_01847 Sps_01847 Sps_01848 Sps_01848 Sps_01849 Sps_01849 Sps_01850 Sps_01850 Sps_01851 Sps_01851 Sps_01896 Sps_01896 Sps_01897 Sps_01897 Sps_01994 Sps_01994 Sps_02191 Sps_02191 Sps_02202 Sps_02202 Sps_02249 Sps_02249 Sps_03295 Sps_03295 Sps_03522 Sps_03522 Sps_04128 Sps_04128 Sps_04144 Sps_04144 Sps_04416 Sps_04416 Sps_04446 Sps_04446 Sps_04569 Sps_04569 Sps_04570 Sps_04570 Sps_04571 Sps_04571 Sps_04631 Sps_04631 Sps_04781 Sps_04781 Sps_04788 Sps_04788 Sps_04789 Sps_04789 Sps_04866 Sps_04866 Sps_04896 Sps_04896 Sps_04897 Sps_04897 Sps_04898 Sps_04898 Sps_04899 Sps_04899 Sps_04900 Sps_04900 Sps_04901 Sps_04901 Sps_04902 Sps_04902 Sps_04903 Sps_04903 hmuV hmuV Sps_04910 Sps_04910 Sps_04962 Sps_04962 Sps_05031 Sps_05031 Sps_05032 Sps_05032 Sps_05033 Sps_05033 Sps_05465 Sps_05465 Sps_05487 Sps_05487 Sps_05655 Sps_05655
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00284PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor. (722 aa)
Sps_00285'TIGRFAM: siderophore ferric iron reductase, AHA_1954 family'. (238 aa)
Sps_00286ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component; PFAM: ABC transporter. (255 aa)
Sps_00287ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein. (332 aa)
Sps_00288ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (667 aa)
Sps_00418PFAM: 2OG-Fe(II) oxygenase superfamily. (231 aa)
Sps_00464PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor. (700 aa)
Sps_00542PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor. (698 aa)
Sps_00957Outer membrane cobalamin receptor protein; PFAM: TonB-dependent Receptor Plug Domain; Carboxypeptidase regulatory-like domain. (753 aa)
Sps_01846Hypothetical protein. (419 aa)
Sps_01847Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (206 aa)
Sps_01848PFAM: Biopolymer transport protein ExbD/TolR; TC 2.C.1.1.1. (134 aa)
Sps_01849Outer membrane transport energization protein ExbB; PFAM: MotA/TolQ/ExbB proton channel family; TC 2.C.1.1.1. (174 aa)
Sps_01850Outer membrane transport energization protein ExbB; PFAM: MotA/TolQ/ExbB proton channel family; TC 2.C.1.1.1. (451 aa)
Sps_01851PFAM: Protein of unknown function (DUF3450). (260 aa)
Sps_01896Ferrous iron transporter FeoB; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (763 aa)
Sps_01897Fe2+ transport system protein A; PFAM: FeoA domain. (89 aa)
Sps_01994Outer membrane receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (715 aa)
Sps_02191Outer membrane receptor for ferrienterochelin and colicins; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (848 aa)
Sps_02202Outer membrane receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (820 aa)
Sps_02249TonB family protein; PFAM: Gram-negative bacterial TonB protein C-terminal; TIGRFAM: TonB family C-terminal domain. (393 aa)
Sps_03295Outer membrane receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (800 aa)
Sps_03522Hypothetical protein. (175 aa)
Sps_04128PFAM: TonB-dependent Receptor Plug Domain; Domain of unknown function (DUF4480); Outer membrane protein beta-barrel family; TIGRFAM: TonB-dependent receptor. (929 aa)
Sps_04144PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor. (697 aa)
Sps_04416PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (847 aa)
Sps_04446Outer membrane receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (758 aa)
Sps_04569ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter; TOBE domain. (342 aa)
Sps_04570ABC-type Fe3+ transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component. (543 aa)
Sps_04571ABC-type Fe3+ transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein. (335 aa)
Sps_04631PFAM: Gram-negative bacterial TonB protein C-terminal. (58 aa)
Sps_04781ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein. (274 aa)
Sps_04788ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (385 aa)
Sps_04789ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component; PFAM: ABC transporter. (308 aa)
Sps_04866PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (858 aa)
Sps_04896Heme utilization protein HutZ; PFAM: Pyridoxamine 5'-phosphate oxidase; TIGRFAM: heme utilization protein HutZ. (199 aa)
Sps_04897Heme utilization protein HuvX; PFAM: Haem utilisation ChuX/HutX; TIGRFAM: putative heme utilization carrier protein HutX. (176 aa)
Sps_04898Hypothetical protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. (676 aa)
Sps_04899Outer membrane transport energization protein TonB; PFAM: Gram-negative bacterial TonB protein C-terminal; TIGRFAM: TonB family C-terminal domain; TC 2.C.1.1.1. (253 aa)
Sps_04900Outer membrane transport energization protein ExbB; PFAM: MotA/TolQ/ExbB proton channel family; TC 2.C.1.1.1. (264 aa)
Sps_04901PFAM: Biopolymer transport protein ExbD/TolR; TC 2.C.1.1.1. (138 aa)
Sps_04902ABC-type hemin transport system, periplasmic component; PFAM: Periplasmic binding protein. (317 aa)
Sps_04903ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (338 aa)
hmuVABC-type cobalamin/Fe3+-siderophore transport system, ATPase component; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system. (254 aa)
Sps_04910PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor. (715 aa)
Sps_04962Outer membrane receptor for Fe3+-dicitrate; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (732 aa)
Sps_05031Outer membrane receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (965 aa)
Sps_05032PFAM: FecR protein. (359 aa)
Sps_05033'PFAM: Sigma-70, region 4; Sigma-70 region 2'; 'TIGRFAM: RNA polymerase sigma factor, sigma-70 family'; Belongs to the sigma-70 factor family. ECF subfamily. (205 aa)
Sps_05465PFAM: Domain of unknown function (DUF4098). (251 aa)
Sps_05487Outer membrane receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (718 aa)
Sps_05655Outer membrane receptor for monomeric catechols; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor. (718 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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