STRINGSTRING
Sps_01846 Sps_01846 Sps_01847 Sps_01847 Sps_01848 Sps_01848 Sps_01849 Sps_01849 Sps_01850 Sps_01850 Sps_01851 Sps_01851 Sps_02249 Sps_02249 Sps_04128 Sps_04128 Sps_04631 Sps_04631 Sps_04910 Sps_04910 Sps_05487 Sps_05487
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_01846Hypothetical protein. (419 aa)
Sps_01847Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (206 aa)
Sps_01848PFAM: Biopolymer transport protein ExbD/TolR; TC 2.C.1.1.1. (134 aa)
Sps_01849Outer membrane transport energization protein ExbB; PFAM: MotA/TolQ/ExbB proton channel family; TC 2.C.1.1.1. (174 aa)
Sps_01850Outer membrane transport energization protein ExbB; PFAM: MotA/TolQ/ExbB proton channel family; TC 2.C.1.1.1. (451 aa)
Sps_01851PFAM: Protein of unknown function (DUF3450). (260 aa)
Sps_02249TonB family protein; PFAM: Gram-negative bacterial TonB protein C-terminal; TIGRFAM: TonB family C-terminal domain. (393 aa)
Sps_04128PFAM: TonB-dependent Receptor Plug Domain; Domain of unknown function (DUF4480); Outer membrane protein beta-barrel family; TIGRFAM: TonB-dependent receptor. (929 aa)
Sps_04631PFAM: Gram-negative bacterial TonB protein C-terminal. (58 aa)
Sps_04910PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor. (715 aa)
Sps_05487Outer membrane receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (718 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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