STRINGSTRING
Sps_00529 Sps_00529 Sps_00530 Sps_00530 Sps_00531 Sps_00531 Sps_00642 Sps_00642 Sps_01355 Sps_01355 Sps_01460 Sps_01460 nagZ nagZ Sps_02364 Sps_02364 Sps_02580 Sps_02580 Sps_02581 Sps_02581 Sps_04137 Sps_04137 Sps_04778 Sps_04778
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00529PFAM: Glycosyl hydrolases family 18; Carbohydrate binding domain; Chitinase C. (1129 aa)
Sps_00530Chitinase; PFAM: Glycosyl hydrolases family 18; Carbohydrate binding domain. (892 aa)
Sps_00531Hypothetical protein; PFAM: Carbohydrate binding domain; Chitin binding domain. (393 aa)
Sps_00642PDK repeat-containing protein; PFAM: Bacterial pre-peptidase C-terminal domain; PKD domain; Pregnancy-associated plasma protein-A. (1121 aa)
Sps_01355Chitinase; PFAM: Glycosyl hydrolases family 18; Carbohydrate binding domain. (917 aa)
Sps_01460Chitinase; PFAM: Glycosyl hydrolases family 18; Carbohydrate binding domain. (785 aa)
nagZBeta-glucosidase-like glycosyl hydrolase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. (332 aa)
Sps_02364N-acetyl-beta-hexosaminidase; 'PFAM: Putative carbohydrate binding domain; Glycosyl hydrolase family 20, catalytic domain; Glycosyl hydrolase family 20, domain 2; Chitobiase/beta-hexosaminidase C-terminal domain'. (888 aa)
Sps_02580Uncharacterized protein containing chitin-binding domain type 3; PFAM: Chitinase class I; Carbohydrate binding domain. (566 aa)
Sps_02581'PFAM: Glycosyl hydrolases family 18; Carbohydrate binding domain; Chitinase A, N-terminal domain'. (863 aa)
Sps_04137Chitinase; PFAM: Glycosyl hydrolases family 18; Carbohydrate binding domain. (861 aa)
Sps_04778Hypothetical protein; PFAM: Chitin binding domain. (473 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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