STRINGSTRING
Sps_02048 Sps_02048 Sps_02675 Sps_02675 Sps_03413 Sps_03413 Sps_03524 Sps_03524 Sps_03525 Sps_03525 Sps_04859 Sps_04859
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_02048Antibacterial peptide protease; PFAM: Immune inhibitor A peptidase M6; TIGRFAM: M6 family metalloprotease domain. (776 aa)
Sps_02675PFAM: Carbohydrate binding domain; PKD domain; Peptidase family M28. (693 aa)
Sps_03413Zinc metalloprotease (elastase); Extracellular zinc metalloprotease. (619 aa)
Sps_03524Zinc metalloprotease (elastase); Extracellular zinc metalloprotease. (684 aa)
Sps_03525PFAM: Peptidase propeptide and YPEB domain. (284 aa)
Sps_04859Putative pre-peptidase; PFAM: Peptidase family M9 N-terminal; Collagenase; Bacterial pre-peptidase C-terminal domain. (939 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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