STRINGSTRING
Sps_01636 Sps_01636 Sps_01637 Sps_01637 Sps_01638 Sps_01638 Sps_05473 Sps_05473 Sps_05474 Sps_05474
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_01636PFAM: HlyD family secretion protein; 'TIGRFAM: RND family efflux transporter, MFP subunit'; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (375 aa)
Sps_01637Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1089 aa)
Sps_01638Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1018 aa)
Sps_05473Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1037 aa)
Sps_05474PFAM: HlyD family secretion protein; 'TIGRFAM: RND family efflux transporter, MFP subunit'; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (369 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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