STRINGSTRING
Sps_01552 Sps_01552 Sps_01553 Sps_01553 Sps_01554 Sps_01554 Sps_01555 Sps_01555 Sps_01556 Sps_01556
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_01552ABC-type antimicrobial peptide transport system, permease component; PFAM: MacB-like periplasmic core domain; FtsX-like permease family. (418 aa)
Sps_01553PFAM: HlyD family secretion protein. (407 aa)
Sps_01554PFAM: HlyD family secretion protein. (399 aa)
Sps_01555Multidrug resistance efflux pump; PFAM: HlyD family secretion protein. (351 aa)
Sps_01556ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter. (228 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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