STRINGSTRING
Sps_00226 Sps_00226 Sps_00227 Sps_00227 Sps_00582 Sps_00582 Sps_00583 Sps_00583 Sps_00584 Sps_00584 Sps_00585 Sps_00585 Sps_00777 Sps_00777 Sps_03059 Sps_03059 Sps_03060 Sps_03060 Sps_03061 Sps_03061 Sps_03062 Sps_03062 Sps_03063 Sps_03063 Sps_03093 Sps_03093 Sps_03097 Sps_03097 Sps_03098 Sps_03098 Sps_03099 Sps_03099 Sps_03100 Sps_03100 Sps_03101 Sps_03101 Sps_03102 Sps_03102 Sps_03103 Sps_03103 Sps_04021 Sps_04021 Sps_04667 Sps_04667 Sps_04668 Sps_04668 Sps_05478 Sps_05478
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00226Putative membrane protein; PFAM: Fusaric acid resistance protein family. (623 aa)
Sps_00227PFAM: HlyD family secretion protein; 'TIGRFAM: RND family efflux transporter, MFP subunit'; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (284 aa)
Sps_00582Diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain. (341 aa)
Sps_00583Qaraquat-inducible protein B; PFAM: mce related protein. (875 aa)
Sps_00584PFAM: Paraquat-inducible protein A. (213 aa)
Sps_00585PFAM: Paraquat-inducible protein A. (158 aa)
Sps_00777TIGRFAM: T1SS-143 repeat domain; type I secretion C-terminal target domain. (2850 aa)
Sps_03059Hypothetical protein; PFAM: Putative flagellar system-associated repeat; TIGRFAM: T1SS-143 repeat domain. (4000 aa)
Sps_03060Type I secretion system ATPase, LssB family; PFAM: ABC transporter; ABC transporter transmembrane region; 'TIGRFAM: type I secretion system ATPase, LssB family'. (710 aa)
Sps_03061PFAM: HlyD family secretion protein; 'TIGRFAM: type I secretion membrane fusion protein, HlyD family'. (437 aa)
Sps_03062PFAM: Outer membrane efflux protein; 'TIGRFAM: type I secretion outer membrane protein, TolC family'. (431 aa)
Sps_03063Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: OmpA family. (198 aa)
Sps_03093VCBS repeat-containing protein; TIGRFAM: VCBS repeat; type I secretion C-terminal target domain (VC_A0849 subclass). (2277 aa)
Sps_03097Putative calcium-binding protein; PFAM: von Willebrand factor type A domain; Hemolysin-type calcium-binding repeat (2 copies); Calx-beta domain. (2884 aa)
Sps_03098Type I secretion system ATPase, LssB family; PFAM: ABC transporter; ABC transporter transmembrane region; Peptidase C39 family; 'TIGRFAM: type I secretion system ATPase, LssB family'. (724 aa)
Sps_03099PFAM: HlyD family secretion protein; 'TIGRFAM: type I secretion membrane fusion protein, HlyD family'. (460 aa)
Sps_03100PFAM: Outer membrane efflux protein; 'TIGRFAM: type I secretion outer membrane protein, TolC family'. (471 aa)
Sps_03101PFAM: OmpA family. (199 aa)
Sps_03102Putative periplasmic protein; PFAM: Bacterial transglutaminase-like cysteine proteinase BTLCP. (216 aa)
Sps_03103PFAM: EAL domain; HAMP domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain. (641 aa)
Sps_04021TIGRFAM: anaerobic sulfatase-maturating enzyme; radical SAM additional 4Fe4S-binding SPASM domain. (298 aa)
Sps_04667Colicin V processing peptidase; PFAM: ABC transporter; ABC transporter transmembrane region; Peptidase C39 family. (718 aa)
Sps_04668Multidrug resistance efflux pump; PFAM: HlyD family secretion protein. (415 aa)
Sps_05478Putative hemolysin; PFAM: Domain of unknown function (DUF333). (207 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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