STRINGSTRING
Sps_00524 Sps_00524 Sps_03198 Sps_03198 Sps_04142 Sps_04142 Sps_04217 Sps_04217 Sps_04223 Sps_04223 Sps_04913 Sps_04913 Sps_05280 Sps_05280
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00524'PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS fold'. (1140 aa)
Sps_03198Chemotaxis signal transduction protein; PFAM: CheW-like domain; Response regulator receiver domain. (326 aa)
Sps_04142Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (252 aa)
Sps_04217Hypothetical protein. (39 aa)
Sps_04223'PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain'. (978 aa)
Sps_04913'PFAM: Ammonium Transporter Family; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain'; TIGRFAM: ammonium transporter. (727 aa)
Sps_05280Multi-sensor hybrid histidine kinase; 'PFAM: Cache domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS fold'; TIGRFAM: PAS domain S-box. (1235 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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