(35 nodes) Bacterial extracellular solute-binding proteins, family 3, and ABC transporter, substrate-binding protein network (Shewanella psychrophila)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	Sps_00175	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (247 aa)
	Sps_00392	ABC-type uncharacterized transport system, periplasmic component. (328 aa)
	Sps_00479	Periplasmic component of amino acid ABC-type transporter/signal transduction system; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (247 aa)
	Sps_00641	Periplasmic component of amino acid ABC-type transporter/signal transduction system; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (268 aa)
	Sps_00672	PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signalling domain. (497 aa)
	Sps_00673	Periplasmic component of amino acid ABC-type transporter/signal transduction system; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (250 aa)
	Sps_00674	PFAM: Domain of unknown function (DUF4442). (152 aa)
	Sps_00797	'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (235 aa)
	Sps_00885	Hypothetical protein. (325 aa)
	Sps_00927	PFAM: HD domain; Domain of unknown function (DUF3369); Response regulator receiver domain. (531 aa)
	Sps_00958	'PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain'. (561 aa)
	Sps_00977	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (268 aa)
	Sps_01254	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (246 aa)
	Sps_01255	Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein. (573 aa)
	Sps_01256	Transcriptional regulator; 'PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family'; Belongs to the LysR transcriptional regulatory family. (310 aa)
	Sps_01326	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (295 aa)
	Sps_01426	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (243 aa)
	Sps_01727	'PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Protein of unknown function (DUF3365)'. (559 aa)
	Sps_01828	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (263 aa)
	Sps_02828	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (271 aa)
	Sps_03130	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (276 aa)
	Sps_03898	Hypothetical protein. (159 aa)
	Sps_03900	Hypothetical protein. (86 aa)
	Sps_04041	Hypothetical protein. (281 aa)
	Sps_04178	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (273 aa)
	Sps_04197	Periplasmic component of amino acid ABC-type transporter/signal transduction system; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (266 aa)
	Sps_04433	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (273 aa)
	Sps_04599	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (239 aa)
	Sps_04632	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (242 aa)
	Sps_04857	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (273 aa)
	Sps_04952	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (255 aa)
	Sps_05261	Periplasmic component of amino acid ABC-type transporter/signal transduction system; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (274 aa)
	Sps_05264	Periplasmic component of amino acid ABC-type transporter/signal transduction system; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (239 aa)
	Sps_05403	'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (253 aa)
	Sps_05463	Periplasmic component of amino acid ABC-type transporter/signal transduction system; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (291 aa)

Your Current Organism:

Shewanella psychrophila

NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2

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node1	node2	node1 annotation	node2 annotation	score
Sps_00175	Sps_00392	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	ABC-type uncharacterized transport system, periplasmic component.	0.588
Sps_00175	Sps_00479	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	Periplasmic component of amino acid ABC-type transporter/signal transduction system; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	0.641
Sps_00175	Sps_00885	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	Hypothetical protein.	0.589
Sps_00175	Sps_01254	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	0.630
Sps_00175	Sps_01326	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	0.668
Sps_00175	Sps_01426	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	0.433
Sps_00175	Sps_01828	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	0.440
Sps_00175	Sps_02828	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	0.531
Sps_00175	Sps_04041	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	Hypothetical protein.	0.740
Sps_00175	Sps_04178	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	0.665
Sps_00175	Sps_04197	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	Periplasmic component of amino acid ABC-type transporter/signal transduction system; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	0.581
Sps_00175	Sps_04433	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	0.659
Sps_00175	Sps_04599	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	0.541
Sps_00175	Sps_04632	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	0.600
Sps_00175	Sps_04857	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	0.674
Sps_00175	Sps_04952	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	0.527
Sps_00175	Sps_05261	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	Periplasmic component of amino acid ABC-type transporter/signal transduction system; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	0.625
Sps_00392	Sps_00175	ABC-type uncharacterized transport system, periplasmic component.	Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	0.588
Sps_00392	Sps_00479	ABC-type uncharacterized transport system, periplasmic component.	Periplasmic component of amino acid ABC-type transporter/signal transduction system; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	0.608
Sps_00392	Sps_00673	ABC-type uncharacterized transport system, periplasmic component.	Periplasmic component of amino acid ABC-type transporter/signal transduction system; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.	0.473