STRINGSTRING
Sps_00978 Sps_00978 Sps_00979 Sps_00979 Sps_00980 Sps_00980 Sps_00981 Sps_00981 Sps_00986 Sps_00986 Sps_05571 Sps_05571 Sps_05572 Sps_05572 Sps_05574 Sps_05574 Sps_05575 Sps_05575 Sps_05576 Sps_05576 Sps_05577 Sps_05577 Sps_05578 Sps_05578
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00978PFAM: FlhB HrpN YscU SpaS Family; 'TIGRFAM: type III secretion protein, YscU/HrpY family'. (349 aa)
Sps_00979'PFAM: Bacterial export proteins, family 1'; TIGRFAM: type III secretion protein SpaR/YscT/HrcT. (266 aa)
Sps_00980'PFAM: Bacterial export proteins, family 3'; 'TIGRFAM: type III secretion protein, HrpO family'. (89 aa)
Sps_00981PFAM: FliP family; 'TIGRFAM: type III secretion apparatus protein, YscR/HrcR family'. (216 aa)
Sps_00986PFAM: FHIPEP family; 'TIGRFAM: type III secretion protein, HrcV family'. (685 aa)
Sps_05571Type III secretion apparatus H+-transporting two-sector ATPase; 'PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain'; 'TIGRFAM: type III secretion apparatus H+-transporting two-sector ATPase; ATPase, FliI/YscN family'. (448 aa)
Sps_05572PFAM: Type III secretion protein YscO. (157 aa)
Sps_05574PFAM: Surface presentation of antigens (SPOA); TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ. (317 aa)
Sps_05575PFAM: FliP family; 'TIGRFAM: type III secretion apparatus protein, YscR/HrcR family'. (216 aa)
Sps_05576'PFAM: Bacterial export proteins, family 3'; 'TIGRFAM: type III secretion protein, HrpO family'. (88 aa)
Sps_05577'PFAM: Bacterial export proteins, family 1'; TIGRFAM: type III secretion protein SpaR/YscT/HrcT. (264 aa)
Sps_05578PFAM: FlhB HrpN YscU SpaS Family; 'TIGRFAM: type III secretion protein, YscU/HrpY family'. (348 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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