STRINGSTRING
Sps_01865 Sps_01865 Sps_01866 Sps_01866 Sps_01867 Sps_01867 Sps_01868 Sps_01868 Sps_01869 Sps_01869 Sps_01870 Sps_01870
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_01865TIGR01620 family protein; PFAM: Domain of unknown function (DUF697); TIGRFAM: TIGR01620 family protein. (391 aa)
Sps_01866Putative ATPase; 'PFAM: YcjX-like family, DUF463'. (484 aa)
Sps_01867PFAM: PspC domain; TIGRFAM: phage shock protein C. (131 aa)
Sps_01868PFAM: Phage shock protein B; TIGRFAM: phage shock protein B. (77 aa)
Sps_01869PFAM: PspA/IM30 family; TIGRFAM: phage shock protein A. (227 aa)
Sps_01870Psp operon transcriptional activator PspF; 'PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain'; TIGRFAM: psp operon transcriptional activator PspF. (356 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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