STRINGSTRING
Sps_01871 Sps_01871 Sps_01872 Sps_01872 Sps_01873 Sps_01873 Sps_01874 Sps_01874 Sps_01875 Sps_01875
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_01871ABC-type dipeptide transport system, periplasmic component; 'PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle'. (545 aa)
Sps_01872ABC-type antimicrobial peptide transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component. (343 aa)
Sps_01873PFAM: Binding-protein-dependent transport system inner membrane component; N-terminal TM domain of oligopeptide transport permease C. (296 aa)
Sps_01874'PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region'; 'TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain'; Belongs to the ABC transporter superfamily. (337 aa)
Sps_01875ABC-type antimicrobial peptide transport system, ATPase component; 'PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region'. (275 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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