STRINGSTRING
Sps_00421 Sps_00421 Sps_00422 Sps_00422 Sps_00423 Sps_00423 Sps_01983 Sps_01983 pstB pstB Sps_01985 Sps_01985 Sps_01986 Sps_01986 Sps_02218 Sps_02218 Sps_02320 Sps_02320 Sps_02323 Sps_02323 Sps_02324 Sps_02324 Sps_02613 Sps_02613 Sps_02901 Sps_02901 Sps_02996 Sps_02996 folE folE Sps_03423 Sps_03423 Sps_03573 Sps_03573 Sps_03686 Sps_03686 rsgA rsgA thiL thiL rsgA-2 rsgA-2 Sps_05643 Sps_05643 Sps_05644 Sps_05644 Sps_05645 Sps_05645 pstB-2 pstB-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00421'PFAM: ABC transporter, phosphonate, periplasmic substrate-binding protein'; 'TIGRFAM: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein'. (284 aa)
Sps_00422ABC-type phosphate/phosphonate transport system, ATPase component; PFAM: ABC transporter. (229 aa)
Sps_00423ABC-type phosphate/phosphonate transport system, permease component. (528 aa)
Sps_01983Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake. (236 aa)
pstBPhosphate ABC transporter ATP-binding protein, PhoT family; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (272 aa)
Sps_01985Phosphate ABC transporter, permease protein PstA; PFAM: Binding-protein-dependent transport system inner membrane component; 'TIGRFAM: phosphate ABC transporter, permease protein PstA'. (550 aa)
Sps_01986ABC-type uncharacterized transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component. (751 aa)
Sps_02218Phosphate ABC transporter substrate-binding protein, PhoT family; PFAM: PBP superfamily domain; TIGRFAM: phosphate binding protein. (323 aa)
Sps_02320ABC-type phosphate/phosphonate transport system, periplasmic component; 'PFAM: ABC transporter, phosphonate, periplasmic substrate-binding protein'. (268 aa)
Sps_02323PFAM: Alkaline phosphatase; Belongs to the alkaline phosphatase family. (499 aa)
Sps_02324PFAM: Alkaline phosphatase; Belongs to the alkaline phosphatase family. (531 aa)
Sps_02613PFAM: PhoD-like phosphatase. (590 aa)
Sps_02901PFAM: Alkaline phosphatase; Belongs to the alkaline phosphatase family. (450 aa)
Sps_02996PFAM: PhoD-like phosphatase. (625 aa)
folEPFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I. (219 aa)
Sps_03423Putative phosphatase; PFAM: Bacterial protein of unknown function (DUF839). (676 aa)
Sps_03573FolB domain protein; PFAM: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; FolB domain. (124 aa)
Sps_03686ABC-type phosphate/phosphonate transport system, periplasmic component; 'PFAM: ABC transporter, phosphonate, periplasmic substrate-binding protein'; 'TIGRFAM: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein'. (292 aa)
rsgARibosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. (382 aa)
thiLThiamine-phosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. (319 aa)
rsgA-2Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. (337 aa)
Sps_05643Phosphate ABC transporter substrate-binding protein, PhoT family; PFAM: PBP superfamily domain; TIGRFAM: phosphate binding protein. (269 aa)
Sps_05644Phosphate ABC transporter membrane protein 1, PhoT family; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (301 aa)
Sps_05645PFAM: Binding-protein-dependent transport system inner membrane component; 'TIGRFAM: phosphate ABC transporter, permease protein PstA'. (286 aa)
pstB-2Phosphate ABC transporter ATP-binding protein, PhoT family; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (249 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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