STRINGSTRING
Sps_01041 Sps_01041 Sps_01042 Sps_01042 Sps_01045 Sps_01045 Sps_01046 Sps_01046 Sps_01047 Sps_01047 Sps_01048 Sps_01048 Sps_01049 Sps_01049 Sps_01050 Sps_01050 Sps_01051 Sps_01051 Sps_01052 Sps_01052 Sps_01053 Sps_01053 Sps_01054 Sps_01054
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_01041Type VI secretion protein IcmF; PFAM: Protein of unknown function (DUF1215); ImcF-related N-terminal domain; Intracellular multiplication and human macrophage-killing; TIGRFAM: type VI secretion protein IcmF. (1187 aa)
Sps_01042PFAM: ImpA-related N-terminal; 'TIGRFAM: type VI secretion-associated protein, VC_A0119 family'. (467 aa)
Sps_01045Type VI secretion ATPase, ClpV1 family; 'PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA)'; 'TIGRFAM: type VI secretion ATPase, ClpV1 family'; Belongs to the ClpA/ClpB family. (861 aa)
Sps_01046PFAM: Uncharacterized protein conserved in bacteria (DUF2077); 'TIGRFAM: type IV / VI secretion system protein, DotU family'. (261 aa)
Sps_01047PFAM: Bacterial protein of unknown function (DUF876); 'TIGRFAM: type VI secretion protein, VC_A0114 family'. (444 aa)
Sps_01048PFAM: Type VI secretion lipoprotein; 'TIGRFAM: type VI secretion lipoprotein, VC_A0113 family'. (157 aa)
Sps_01049PFAM: FHA domain; TIGRFAM: type VI secretion system FHA domain protein. (450 aa)
Sps_01050PFAM: Protein of unknown function (DUF1305); 'TIGRFAM: type VI secretion protein, VC_A0111 family'. (335 aa)
Sps_01051PFAM: Bacterial protein of unknown function (DUF879); 'TIGRFAM: type VI secretion protein, VC_A0110 family'. (588 aa)
Sps_01052PFAM: Gene 25-like lysozyme; TIGRFAM: type VI secretion system lysozyme-like protein. (141 aa)
Sps_01053PFAM: Protein of unknown function (DUF877); 'TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family'. (491 aa)
Sps_01054PFAM: Protein of unknown function (DUF770); 'TIGRFAM: type VI secretion protein, VC_A0107 family'. (162 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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