STRINGSTRING
Sps_00438 Sps_00438 Sps_01378 Sps_01378 Sps_01392 Sps_01392 Sps_01639 Sps_01639 truA truA Sps_01771 Sps_01771 Sps_01772 Sps_01772 Sps_01805 Sps_01805 Sps_02759 Sps_02759 Sps_04361 Sps_04361 Sps_04363 Sps_04363 ybeY ybeY Sps_04365 Sps_04365 lnt lnt Sps_04578 Sps_04578 Sps_04777 Sps_04777 Sps_04895 Sps_04895 Sps_05243 Sps_05243
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00438ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter. (529 aa)
Sps_01378PFAM: Low molecular weight phosphotyrosine protein phosphatase. (158 aa)
Sps_01392ATPase involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (371 aa)
Sps_01639Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily. (289 aa)
truAtRNA pseudouridine(38-40) synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (261 aa)
Sps_01771ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter; ABC transporter transmembrane region. (562 aa)
Sps_01772ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter; ABC transporter transmembrane region. (550 aa)
Sps_01805Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain. (149 aa)
Sps_02759Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain. (347 aa)
Sps_04361Hypothetical protein. (116 aa)
Sps_04363Phosphate starvation-inducible protein PhoH, predicted ATPase; PFAM: PhoH-like protein. (347 aa)
ybeYPutative rRNA maturation factor YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (158 aa)
Sps_04365Putative Mg2+ and Co2+ transporter CorC; PFAM: CBS domain; Transporter associated domain. (291 aa)
lntApolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. (514 aa)
Sps_04578Fused permease/ATPase component of ABC transporter involved in Fe-S cluster assembly; PFAM: ABC transporter; ABC transporter transmembrane region. (589 aa)
Sps_04777Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain. (116 aa)
Sps_04895PFAM: ABC transporter; ABC transporter transmembrane region; 'TIGRFAM: ABC transporter, permease/ATP-binding protein'. (634 aa)
Sps_05243Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain. (275 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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