Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Sps_01344 | Sps_04931 | Sps_01344 | Sps_04931 | PFAM: Adenosylmethionine decarboxylase. | PFAM: Spermine/spermidine synthase. | 0.405 |
| Sps_01344 | speA | Sps_01344 | Sps_01345 | PFAM: Adenosylmethionine decarboxylase. | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. | 0.688 |
| Sps_01344 | speE | Sps_01344 | Sps_05012 | PFAM: Adenosylmethionine decarboxylase. | Putative spermidine synthase with an N-terminal membrane domain; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. | 0.900 |
| Sps_01497 | kynA | Sps_01497 | Sps_02014 | Tryptophanase; PFAM: Beta-eliminating lyase; 'TIGRFAM: tryptophanase, leader peptide-associated'. | Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety. | 0.900 |
| Sps_01497 | trpA | Sps_01497 | Sps_01696 | Tryptophanase; PFAM: Beta-eliminating lyase; 'TIGRFAM: tryptophanase, leader peptide-associated'. | Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.928 |
| Sps_01497 | trpB | Sps_01497 | Sps_01695 | Tryptophanase; PFAM: Beta-eliminating lyase; 'TIGRFAM: tryptophanase, leader peptide-associated'. | Tryptophan synthase, beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.929 |
| Sps_01594 | trpA | Sps_01594 | Sps_01696 | 'PFAM: Glycosyl transferase family, a/b domain; Glycosyl transferase family, helical bundle domain'. | Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.960 |
| Sps_01594 | trpB | Sps_01594 | Sps_01695 | 'PFAM: Glycosyl transferase family, a/b domain; Glycosyl transferase family, helical bundle domain'. | Tryptophan synthase, beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.960 |
| Sps_01594 | trpC | Sps_01594 | Sps_01694 | 'PFAM: Glycosyl transferase family, a/b domain; Glycosyl transferase family, helical bundle domain'. | PFAM: Indole-3-glycerol phosphate synthase; N-(5'phosphoribosyl)anthranilate (PRA) isomerase; Belongs to the TrpC family. | 0.994 |
| Sps_03936 | Sps_04931 | Sps_03936 | Sps_04931 | Peptidylarginine deiminase-like enzyme; PFAM: Porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family. | PFAM: Spermine/spermidine synthase. | 0.407 |
| Sps_03936 | speA | Sps_03936 | Sps_01345 | Peptidylarginine deiminase-like enzyme; PFAM: Porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family. | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. | 0.966 |
| Sps_04931 | Sps_01344 | Sps_04931 | Sps_01344 | PFAM: Spermine/spermidine synthase. | PFAM: Adenosylmethionine decarboxylase. | 0.405 |
| Sps_04931 | Sps_03936 | Sps_04931 | Sps_03936 | PFAM: Spermine/spermidine synthase. | Peptidylarginine deiminase-like enzyme; PFAM: Porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family. | 0.407 |
| Sps_04931 | speA | Sps_04931 | Sps_01345 | PFAM: Spermine/spermidine synthase. | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. | 0.407 |
| kynA | Sps_01497 | Sps_02014 | Sps_01497 | Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety. | Tryptophanase; PFAM: Beta-eliminating lyase; 'TIGRFAM: tryptophanase, leader peptide-associated'. | 0.900 |
| kynA | trpA | Sps_02014 | Sps_01696 | Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety. | Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.815 |
| kynA | trpB | Sps_02014 | Sps_01695 | Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety. | Tryptophan synthase, beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.800 |
| speA | Sps_01344 | Sps_01345 | Sps_01344 | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. | PFAM: Adenosylmethionine decarboxylase. | 0.688 |
| speA | Sps_03936 | Sps_01345 | Sps_03936 | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. | Peptidylarginine deiminase-like enzyme; PFAM: Porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family. | 0.966 |
| speA | Sps_04931 | Sps_01345 | Sps_04931 | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. | PFAM: Spermine/spermidine synthase. | 0.407 |
page 1 of 2