STRINGSTRING
Sps_04474 Sps_04474 Sps_05107 Sps_05107 Sps_05093 Sps_05093 Sps_00195 Sps_00195 Sps_00632 Sps_00632 Sps_00831 Sps_00831 Sps_00832 Sps_00832 Sps_00970 Sps_00970 Sps_02316 Sps_02316 Sps_02767 Sps_02767 Sps_02771 Sps_02771 Sps_03026 Sps_03026 Sps_03062 Sps_03062 Sps_05331 Sps_05331 Sps_03100 Sps_03100 Sps_03528 Sps_03528 Sps_03572 Sps_03572 Sps_04049 Sps_04049 Sps_04150 Sps_04150
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_04474PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. (1042 aa)
Sps_05107PFAM: Outer membrane efflux protein; 'TIGRFAM: type I secretion outer membrane protein, TolC family'. (448 aa)
Sps_05093Putative permease, DMT superfamily; PFAM: EamA-like transporter family. (291 aa)
Sps_00195PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. (1047 aa)
Sps_00632Putative permease; PFAM: Domain of unknown function DUF20. (360 aa)
Sps_00831PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. (1055 aa)
Sps_00832PFAM: Outer membrane efflux protein; 'TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family'. (477 aa)
Sps_00970PFAM: Outer membrane efflux protein. (448 aa)
Sps_02316PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. (1039 aa)
Sps_02767Putative permease; PFAM: Domain of unknown function DUF20. (388 aa)
Sps_02771PFAM: Outer membrane efflux protein. (553 aa)
Sps_03026PFAM: Outer membrane efflux protein. (447 aa)
Sps_03062PFAM: Outer membrane efflux protein; 'TIGRFAM: type I secretion outer membrane protein, TolC family'. (431 aa)
Sps_05331PFAM: Outer membrane efflux protein. (471 aa)
Sps_03100PFAM: Outer membrane efflux protein; 'TIGRFAM: type I secretion outer membrane protein, TolC family'. (471 aa)
Sps_03528Putative permease, DMT superfamily; PFAM: EamA-like transporter family. (297 aa)
Sps_03572Putative permease; PFAM: Domain of unknown function DUF20. (359 aa)
Sps_04049Putative permease; PFAM: Domain of unknown function DUF20. (365 aa)
Sps_04150PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. (1047 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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