STRINGSTRING
Sps_04433 Sps_04433 Sps_05420 Sps_05420 Sps_05261 Sps_05261 Sps_04952 Sps_04952 Sps_04632 Sps_04632 Sps_04197 Sps_04197 Sps_04178 Sps_04178 pyrB pyrB Sps_02828 Sps_02828 argR argR Sps_02529 Sps_02529 Sps_01426 Sps_01426 Sps_01326 Sps_01326 Sps_01254 Sps_01254 Sps_00673 Sps_00673 Sps_00479 Sps_00479
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_04433Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (273 aa)
Sps_05420Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. (302 aa)
Sps_05261Periplasmic component of amino acid ABC-type transporter/signal transduction system; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (274 aa)
Sps_04952Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (255 aa)
Sps_04632Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (242 aa)
Sps_04197Periplasmic component of amino acid ABC-type transporter/signal transduction system; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (266 aa)
Sps_04178Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (273 aa)
pyrB'PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain'; TIGRFAM: aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. (310 aa)
Sps_02828Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (271 aa)
argRTranscriptional regulator, ArgR family; Regulates arginine biosynthesis genes. (156 aa)
Sps_02529Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (273 aa)
Sps_01426Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (243 aa)
Sps_01326Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (295 aa)
Sps_01254Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (246 aa)
Sps_00673Periplasmic component of amino acid ABC-type transporter/signal transduction system; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (250 aa)
Sps_00479Periplasmic component of amino acid ABC-type transporter/signal transduction system; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'. (247 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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