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rraA rraA Sps_04586 Sps_04586 rraB rraB yihI yihI Sps_05397 Sps_05397 Sps_05580 Sps_05580 yacG yacG Sps_00496 Sps_00496 Sps_01211 Sps_01211 Sps_01409 Sps_01409 Sps_01612 Sps_01612 Sps_02374 Sps_02374 Sps_02609 Sps_02609
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rraARegulator of ribonuclease activity A; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. Modulates RNA-binding and helicase activities of the degradosome. (161 aa)
Sps_04586PFAM: Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. (112 aa)
rraBHypothetical protein; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. (139 aa)
yihIHypothetical protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family. (181 aa)
Sps_05397PFAM: LppC putative lipoprotein. (629 aa)
Sps_05580Hypothetical protein; 'PFAM: YopE, N terminal; Yersinia virulence determinant (YopE)'. (540 aa)
yacGHypothetical protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. (70 aa)
Sps_00496Hypothetical protein; PFAM: RecX family. (270 aa)
Sps_01211RraA family protein; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions. (164 aa)
Sps_01409PFAM: Small subunit of acetolactate synthase; ACT domain; 'TIGRFAM: acetolactate synthase, small subunit'. (164 aa)
Sps_01612Serine protease inhibitor ecotin; PFAM: Ecotin. (201 aa)
Sps_02374PFAM: Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. (112 aa)
Sps_02609Uncharacterized lipoprotein; PFAM: Protein of unknown function (DUF3897); TIGRFAM: uncharacterized proteobacterial lipoprotein. (197 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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