STRINGSTRING
Sps_00421 Sps_00421 Sps_00169 Sps_00169 potA potA Sps_02869 Sps_02869 Sps_03191 Sps_03191 Sps_03686 Sps_03686 Sps_04569 Sps_04569 Sps_04587 Sps_04587 Sps_04588 Sps_04588 Sps_04993 Sps_04993 Sps_04994 Sps_04994 Sps_05200 Sps_05200 Sps_05207 Sps_05207 Sps_05291 Sps_05291 Sps_05314 Sps_05314 Sps_05315 Sps_05315 Sps_05328 Sps_05328 Sps_05329 Sps_05329 Sps_05392 Sps_05392 Sps_05494 Sps_05494 Sps_05610 Sps_05610 Sps_01349 Sps_01349 Sps_01738 Sps_01738 Sps_01871 Sps_01871 Sps_01942 Sps_01942 Sps_01943 Sps_01943 Sps_01944 Sps_01944 Sps_02320 Sps_02320
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00421'PFAM: ABC transporter, phosphonate, periplasmic substrate-binding protein'; 'TIGRFAM: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein'. (284 aa)
Sps_00169ABC-type cobalt transport system, ATPase component; PFAM: ABC transporter. (239 aa)
potASpermidine/putrescine ABC transporter ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (378 aa)
Sps_02869'PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle'. (564 aa)
Sps_03191ABC-type proline/glycine betaine transport system, periplasmic component; PFAM: Substrate binding domain of ABC-type glycine betaine transport system. (312 aa)
Sps_03686ABC-type phosphate/phosphonate transport system, periplasmic component; 'PFAM: ABC transporter, phosphonate, periplasmic substrate-binding protein'; 'TIGRFAM: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein'. (292 aa)
Sps_04569ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter; TOBE domain. (342 aa)
Sps_04587PFAM: Predicted permease YjgP/YjgQ family. (352 aa)
Sps_04588PFAM: Predicted permease YjgP/YjgQ family. (370 aa)
Sps_04993ABC-type polysaccharide/polyol phosphate export systems, permease component; PFAM: ABC-2 type transporter. (258 aa)
Sps_04994ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter. (341 aa)
Sps_05200Conserved hypothetical integral membrane protein; PFAM: Permease; TIGRFAM: ABC transport permease subunit. (260 aa)
Sps_05207ABC-type (unclassified) transport system, ATPase component; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter. (243 aa)
Sps_05291ABC-type Mn2+/Zn2+ transport system, permease component; PFAM: ABC 3 transport family. (265 aa)
Sps_05314ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter. (318 aa)
Sps_05315ABC-type multidrug transport system, permease component; PFAM: ABC-2 family transporter protein; 'TIGRFAM: ABC transporter efflux protein, DrrB family'. (367 aa)
Sps_05328ABC-type multidrug transport system, permease component; PFAM: ABC-2 family transporter protein. (387 aa)
Sps_05329ABC-type multidrug transport system, permease component; PFAM: ABC-2 family transporter protein. (399 aa)
Sps_05392ABC-type proline/glycine betaine transport system, periplasmic component; PFAM: Substrate binding domain of ABC-type glycine betaine transport system. (334 aa)
Sps_05494ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter; Belongs to the ABC transporter superfamily. (369 aa)
Sps_05610ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter. (288 aa)
Sps_01349ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter. (299 aa)
Sps_01738ABC-type proline/glycine betaine transport system, periplasmic component; PFAM: Substrate binding domain of ABC-type glycine betaine transport system. (260 aa)
Sps_01871ABC-type dipeptide transport system, periplasmic component; 'PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle'. (545 aa)
Sps_01942ATPase component of Mn/Zn ABC-type transporter; PFAM: ABC transporter. (287 aa)
Sps_01943ABC-type Mn2+/Zn2+ transport system, permease component; PFAM: ABC 3 transport family. (309 aa)
Sps_01944ABC-type Mn2+/Zn2+ transport system, permease component; PFAM: ABC 3 transport family. (312 aa)
Sps_02320ABC-type phosphate/phosphonate transport system, periplasmic component; 'PFAM: ABC transporter, phosphonate, periplasmic substrate-binding protein'. (268 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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