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| | Sps_00103 | PFAM: Flagellar basal body rod FlgEFG protein C-terminal; Flagella basal body rod protein; 'TIGRFAM: flagellar hook-basal body protein; flagellar basal-body rod protein FlgG, Gram-negative bacteria'; Belongs to the flagella basal body rod proteins family. (261 aa) |
| | rpmH | PFAM: Ribosomal protein L34; 'TIGRFAM: ribosomal protein L34, bacterial type'; Belongs to the bacterial ribosomal protein bL34 family. (45 aa) |
| | gyrB | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (805 aa) |
| | Sps_00074 | Zn-finger domain-containing protein (topoisomerase type I-like); PFAM: Topoisomerase DNA binding C4 zinc finger. (187 aa) |
| | Sps_00091 | Flagellar basal body-associated protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. (152 aa) |
| | Sps_00092 | PFAM: Flagellar hook-length control protein FliK. (345 aa) |
| | Sps_00095 | Flagellar capping protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. (455 aa) |
| | Sps_00096 | Flagellin/flagellar hook associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (284 aa) |
| | Sps_00098 | Flagellar hook-associated protein 3; PFAM: Bacterial flagellin N-terminal helical region; TIGRFAM: flagellar hook-associated protein 3. (305 aa) |
| | flgK | PFAM: Flagellar basal body rod FlgEFG protein C-terminal; Flagella basal body rod protein; TIGRFAM: flagellar hook-associated protein FlgK. (460 aa) |
| | flgI | Flagellar basal-body P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (377 aa) |
| | flgH | Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (220 aa) |
| | Sps_00104 | PFAM: Flagellar basal body rod FlgEFG protein C-terminal; Flagella basal body rod protein; TIGRFAM: flagellar hook-basal body protein. (244 aa) |
| | Sps_00105 | PFAM: Flagellar basal body rod FlgEFG protein C-terminal; Flagella basal body rod protein; Flagellar basal body protein FlaE; TIGRFAM: flagellar hook-basal body protein. (402 aa) |
| | Sps_00107 | PFAM: Flagellar basal body rod FlgEFG protein C-terminal; Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family. (139 aa) |
| | Sps_00108 | Flagellar basal body protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. (116 aa) |
| | Sps_00114 | Flagellar biosynthesis/type III secretory pathway protein; PFAM: Flagellar assembly protein FliH. (263 aa) |
| | Sps_00115 | Flagellar motor switch protein; PFAM: FliG middle domain; FliG C-terminal domain; FliG N-terminal domain; TIGRFAM: flagellar motor switch protein FliG. (337 aa) |
| | Sps_00116 | Flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. (570 aa) |
| | fliE | PFAM: Flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex protein FliE. (112 aa) |
| | Sps_00120 | PFAM: Surface presentation of antigens (SPOA). (292 aa) |
| | Sps_00121 | Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. (118 aa) |
| | fliP | Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. (242 aa) |
| | Sps_00124 | Flagellar biosynthesis pathway, component FliQ; 'PFAM: Bacterial export proteins, family 3'; TIGRFAM: flagellar biosynthetic protein FliQ. (89 aa) |
| | Sps_00125 | Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family. (259 aa) |
| | Sps_00144 | Transcriptional regulator, TetR family; 'PFAM: Bacterial transcriptional repressor; Bacterial regulatory proteins, tetR family'. (218 aa) |
| | Sps_00315 | PFAM: Flagellar protein YcgR; PilZ domain. (237 aa) |
| | rplK | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (142 aa) |
| | rplA | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (233 aa) |
| | rplJ | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (166 aa) |
| | rplL | LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (122 aa) |
| | rpsL | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (124 aa) |
| | rpsG | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | rpsJ | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (103 aa) |
| | rplC | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (212 aa) |
| | rplD | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. (201 aa) |
| | rplW | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (99 aa) |
| | rplB | LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (275 aa) |
| | rpsS | Ribosomal protein S19, bacterial/organelle; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa) |
| | rplV | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (110 aa) |
| | rpsC | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (229 aa) |
| | rplP | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (136 aa) |
| | rpmC | PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (63 aa) |
| | rpsQ | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (82 aa) |
| | rplN | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rplX | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (104 aa) |
| | rplE | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (179 aa) |
| | rpsN | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (101 aa) |
| | rpsH | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa) |
| | rplF | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (176 aa) |
| | rplR | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (116 aa) |
| | rpsE | Ribosomal protein S5, bacterial/organelle type; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (167 aa) |
| | rpmD | PFAM: Ribosomal protein L30p/L7e; 'TIGRFAM: ribosomal protein L30, bacterial/organelle'. (61 aa) |
| | rplO | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (144 aa) |
| | rpsM | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (118 aa) |
| | rpsK | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (130 aa) |
| | rpsD | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (206 aa) |
| | rplQ | PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17. (131 aa) |
| | Sps_00557 | PFAM: Cupin superfamily protein. (374 aa) |
| | clpS | Hypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. (102 aa) |
| | rplY | LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. (95 aa) |
| | Sps_00626 | PFAM: Bacterial dnaA protein; TIGRFAM: DnaA regulatory inactivator Hda; Belongs to the DnaA family. (236 aa) |
| | Sps_00661 | PFAM: Protein of unknown function (DUF3334). (235 aa) |
| | Sps_00665 | PFAM: Cupin superfamily protein. (380 aa) |
| | Sps_00685 | Hypothetical protein; PFAM: Putative heavy-metal-binding; Belongs to the UPF0145 family. (105 aa) |
| | Sps_00719 | Bacterial flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (228 aa) |
| | Sps_00798 | ATP-dependent DNA helicase, RecQ-like; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; 'TIGRFAM: ATP-dependent DNA helicase, RecQ family'. (654 aa) |
| | gyrA | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (904 aa) |
| | Sps_00817 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (555 aa) |
| | ihfB | Integration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (95 aa) |
| | Sps_01070 | Recombination protein MgsA; PFAM: MgsA AAA+ ATPase C terminal; ATPase family associated with various cellular activities (AAA). (443 aa) |
| | rplT | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (119 aa) |
| | rpmI | PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (64 aa) |
| | rpmF | PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (56 aa) |
| | Sps_01492 | Hypothetical protein; PFAM: Glutathione-dependent formaldehyde-activating enzyme. (135 aa) |
| | Sps_01651 | Hypothetical protein. (197 aa) |
| | topA | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (919 aa) |
| | recR | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (199 aa) |
| | Sps_01670 | DNA-binding protein, YbaB/EbfC family; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (109 aa) |
| | Sps_01736 | PFAM: Bacterial protein of unknown function (DUF924). (148 aa) |
| | topB | DNA topoisomerase III; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA su [...] (649 aa) |
| | Sps_01851 | PFAM: Protein of unknown function (DUF3450). (260 aa) |
| | Sps_01855 | 'PFAM: DNA polymerase family B; DNA polymerase family B, exonuclease domain'. (811 aa) |
| | Sps_01858 | Restart primosome assembly protein PriC; PFAM: Primosomal replication protein priB and priC. (224 aa) |
| | Sps_01918 | 'PFAM: Bacterial regulatory proteins, tetR family'. (241 aa) |
| | Sps_01964 | PFAM: Bacterial DNA-binding protein; Belongs to the bacterial histone-like protein family. (100 aa) |
| | Sps_01965 | PFAM: Bacterial DNA-binding protein; Belongs to the bacterial histone-like protein family. (92 aa) |
| | rpsB | PFAM: Ribosomal protein S2; 'TIGRFAM: ribosomal protein S2, bacterial type'; Belongs to the universal ribosomal protein uS2 family. (242 aa) |
| | Sps_02319 | Hypothetical protein. (72 aa) |
| | rpsT | SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. (88 aa) |
| | Sps_02413 | PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein. (119 aa) |
| | rplS | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (117 aa) |
| | rimM | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. (176 aa) |
| | rpsP | PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (83 aa) |
| | Sps_02433 | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. (225 aa) |
| | Sps_02492 | PFAM: Surface presentation of antigens (SPOA). (70 aa) |
| | rpsU | PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (71 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (575 aa) |
| | Sps_02686 | PFAM: Bacterial protein of unknown function (DUF924). (196 aa) |
| | rpmA | PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (84 aa) |
| | rplU | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa) |
| | Sps_02867 | Chemotaxis protein CheC, inhibitor of MCP methylation; PFAM: CheC-like family. (210 aa) |
| | Sps_02950 | Hypothetical protein; PFAM: Glutathione-dependent formaldehyde-activating enzyme. (140 aa) |
| | fis | Factor for inversion stimulation Fis, transcriptional activator; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. (101 aa) |
| | Sps_03110 | 'PFAM: Bacterial regulatory proteins, tetR family'. (196 aa) |
| | Sps_03214 | PFAM: CYTH domain; 'TIGRFAM: adenylyl cyclase CyaB, putative'. (182 aa) |
| | Sps_03292 | ATP-dependent DNA helicase RecQ; PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; 'TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family'. (608 aa) |
| | rpmG | PFAM: Ribosomal protein L33; 'TIGRFAM: ribosomal protein L33, bacterial type'; Belongs to the bacterial ribosomal protein bL33 family. (57 aa) |
| | rpmB | LSU ribosomal protein L28P; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (78 aa) |
| | slmA | Transcriptional regulator, TetR family; Required for nucleoid occlusion (NO) phenomenon, which prevents Z-ring formation and cell division over the nucleoid. Acts as a DNA-associated cell division inhibitor that binds simultaneously chromosomal DNA and FtsZ, and disrupts the assembly of FtsZ polymers. SlmA-DNA-binding sequences (SBS) are dispersed on non-Ter regions of the chromosome, preventing FtsZ polymerization at these regions. (197 aa) |
| | Sps_03312 | Hypothetical protein; 'PFAM: Uncharacterised ACR, COG2135'; Belongs to the SOS response-associated peptidase family. (233 aa) |
| | Sps_03510 | Hypothetical protein; PFAM: Glutathione-dependent formaldehyde-activating enzyme. (141 aa) |
| | smc | Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1136 aa) |
| | betI | Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes. (196 aa) |
| | Sps_03763 | Chemotaxis phosphatase, CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). (245 aa) |
| | Sps_03770 | Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family. (265 aa) |
| | Sps_03772 | Flagellar biosynthesis pathway, component FliQ; 'PFAM: Bacterial export proteins, family 3'; TIGRFAM: flagellar biosynthetic protein FliQ. (89 aa) |
| | fliP-2 | Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. (248 aa) |
| | Sps_03774 | 'PFAM: Flagellar biosynthesis protein, FliO'; TIGRFAM: flagellar biosynthetic protein FliO. (123 aa) |
| | Sps_03775 | Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. (127 aa) |
| | Sps_03776 | Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. (344 aa) |
| | Sps_03777 | Flagellar basal body-associated protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. (173 aa) |
| | Sps_03778 | PFAM: Flagellar hook-length control protein FliK. (532 aa) |
| | Sps_03779 | PFAM: Flagellar FliJ protein; TIGRFAM: flagellar export protein FliJ. (148 aa) |
| | Sps_03781 | Flagellar biosynthesis/type III secretory pathway protein; PFAM: Flagellar assembly protein FliH. (344 aa) |
| | Sps_03782 | Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. (345 aa) |
| | Sps_03783 | Flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. (567 aa) |
| | fliE-2 | PFAM: Flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex protein FliE. (114 aa) |
| | Sps_03790 | Flagellar capping protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. (453 aa) |
| | Sps_03792 | Flagellin/flagellar hook associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (480 aa) |
| | Sps_03793 | Flagellin/flagellar hook associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (485 aa) |
| | Sps_03794 | Flagellar hook-associated protein 3; PFAM: Bacterial flagellin N-terminal helical region; TIGRFAM: flagellar hook-associated protein 3. (404 aa) |
| | Sps_03795 | PFAM: Flagellar basal body rod FlgEFG protein C-terminal; Flagella basal body rod protein; TIGRFAM: flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family. (638 aa) |
| | flgI-2 | Flagellar basal-body P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (363 aa) |
| | flgH-2 | Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (228 aa) |
| | Sps_03799 | PFAM: Flagellar basal body rod FlgEFG protein C-terminal; Flagella basal body rod protein; 'TIGRFAM: flagellar hook-basal body protein; flagellar basal-body rod protein FlgG, Gram-negative bacteria'; Belongs to the flagella basal body rod proteins family. (262 aa) |
| | Sps_03800 | PFAM: Flagellar basal body rod FlgEFG protein C-terminal; Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgF; flagellar hook-basal body protein; Belongs to the flagella basal body rod proteins family. (247 aa) |
| | Sps_03801 | PFAM: Flagellar basal body rod FlgEFG protein C-terminal; Flagella basal body rod protein; Flagellar basal body protein FlaE; TIGRFAM: flagellar hook-basal body protein. (455 aa) |
| | Sps_03802 | PFAM: Flagellar basal body rod FlgEFG protein C-terminal; Flagella basal body rod protein; Flagellar basal body protein FlaE; TIGRFAM: flagellar hook-basal body protein. (454 aa) |
| | Sps_03804 | PFAM: Flagellar basal body rod FlgEFG protein C-terminal; Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family. (138 aa) |
| | Sps_03805 | Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. (132 aa) |
| | Sps_03822 | PFAM: TfoX C-terminal domain. (89 aa) |
| | Sps_03979 | PFAM: Bacterial protein of unknown function (DUF924). (157 aa) |
| | Sps_04043 | PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein. (118 aa) |
| | Sps_04116 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. (553 aa) |
| | rpsO | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa) |
| | Sps_04384 | Hypothetical protein. (116 aa) |
| | Sps_04600 | 'PFAM: DNA polymerase III chi subunit, HolC'. (156 aa) |
| | Sps_04764 | 'PFAM: Bacterial regulatory proteins, tetR family'. (190 aa) |
| | Sps_04820 | DNA replication protein; PFAM: IstB-like ATP binding protein; IstB-like ATP binding N-terminal. (248 aa) |
| | Sps_04955 | Hypothetical protein. (284 aa) |
| | Sps_05034 | Hypothetical protein; PFAM: Glutathione-dependent formaldehyde-activating enzyme. (148 aa) |
| | Sps_05072 | PFAM: Stringent starvation protein B. (172 aa) |
| | parC | DNA topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. (757 aa) |
| | parE | DNA topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. (628 aa) |
| | Sps_05145 | PFAM: Helix-turn-helix domain. (247 aa) |
| | Sps_05174 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (468 aa) |
| | rplI | LSU ribosomal protein L9P; Binds to the 23S rRNA. (150 aa) |
| | rpsR | SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (75 aa) |
| | priB | Restart primosome assembly protein PriB; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family. (101 aa) |
| | rpsF | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. (140 aa) |
| | rpsI | PFAM: Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family. (130 aa) |
| | rplM | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (143 aa) |
| | Sps_05209 | PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein. (95 aa) |
| | Sps_05244 | Hypothetical protein. (125 aa) |
| | rpmE | LSU ribosomal protein L31P; Binds the 23S rRNA. (70 aa) |
| | priA | Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (731 aa) |
| | Sps_05532 | Flagellar basal body-associated protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. (140 aa) |
| | Sps_05574 | PFAM: Surface presentation of antigens (SPOA); TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ. (317 aa) |
| | Sps_05668 | Chromosome segregation DNA-binding protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB/RepB/Spo0J family partition protein; Belongs to the ParB family. (295 aa) |
