STRINGSTRING
Sps_03208 Sps_03208 Sps_03146 Sps_03146 Sps_02941 Sps_02941 Sps_02844 Sps_02844 Sps_02580 Sps_02580 Sps_02469 Sps_02469 Sps_02468 Sps_02468 mtnN mtnN Sps_02428 Sps_02428 Sps_02417 Sps_02417 Sps_02292 Sps_02292 Sps_02231 Sps_02231 Sps_02108 Sps_02108 Sps_02100 Sps_02100 Sps_02099 Sps_02099 Sps_02086 Sps_02086 Sps_02081 Sps_02081 Sps_02044 Sps_02044 Sps_02042 Sps_02042 Sps_02041 Sps_02041 kynA kynA lon lon Sps_01737 Sps_01737 hutI hutI deoD deoD Sps_04325 Sps_04325 ftsH ftsH deoD-2 deoD-2 Sps_04225 Sps_04225 Sps_01715 Sps_01715 astB astB Sps_01627 Sps_01627 Sps_01572 Sps_01572 Sps_01543 Sps_01543 Sps_01519 Sps_01519 Sps_01497 Sps_01497 Sps_01434 Sps_01434 cdd cdd speA speA Sps_01311 Sps_01311 Sps_01310 Sps_01310 Sps_01264 Sps_01264 Sps_01249 Sps_01249 Sps_01110 Sps_01110 alc alc Sps_01106 Sps_01106 Sps_01105 Sps_01105 Sps_01074 Sps_01074 Sps_01049 Sps_01049 Sps_01023 Sps_01023 Sps_00973 Sps_00973 Sps_00965 Sps_00965 Sps_00875 Sps_00875 Sps_00843 Sps_00843 Sps_00790 Sps_00790 Sps_04429 Sps_04429 Sps_00789 Sps_00789 astE astE Sps_00775 Sps_00775 Sps_00774 Sps_00774 Sps_03248 Sps_03248 hutU hutU hutH hutH Sps_05382 Sps_05382 hslV hslV Sps_05175 Sps_05175 Sps_05083 Sps_05083 Sps_05067 Sps_05067 astD astD Sps_05022 Sps_05022 Sps_05001 Sps_05001 nagB nagB gcvT gcvT gcvH-2 gcvH-2 gcvP-2 gcvP-2 Sps_04814 Sps_04814 Sps_04623 Sps_04623 Sps_04493 Sps_04493 Sps_04488 Sps_04488 Sps_04487 Sps_04487 Sps_00705 Sps_00705 Sps_00703 Sps_00703 Sps_00702 Sps_00702 gcvP gcvP gcvH gcvH Sps_00691 Sps_00691 dadA dadA Sps_00668 Sps_00668 Sps_00605 Sps_00605 Sps_00596 Sps_00596 aat aat bpt bpt clpS clpS Sps_00223 Sps_00223 Sps_00222 Sps_00222 tdh tdh Sps_00050 Sps_00050 Sps_00027 Sps_00027 dut dut Sps_03319 Sps_03319 Sps_03336 Sps_03336 dtd dtd Sps_03403 Sps_03403 Sps_03405 Sps_03405 Sps_03424 Sps_03424 Sps_03506 Sps_03506 Sps_03666 Sps_03666 Sps_03854 Sps_03854 Sps_03921 Sps_03921 Sps_03941 Sps_03941 Sps_03950 Sps_03950 Sps_03976 Sps_03976 Sps_03982 Sps_03982 Sps_03987 Sps_03987 Sps_04023 Sps_04023 Sps_03302 Sps_03302 Sps_04042 Sps_04042 surE surE Sps_04109 Sps_04109
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
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a 3D structure is known or predicted
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from curated databases
experimentally determined
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Sps_03208'PFAM: Alanine dehydrogenase/PNT, N-terminal domain'. (368 aa)
Sps_03146Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the PNP/UDP phosphorylase family. (252 aa)
Sps_02941Putative dehydrogenase; PFAM: FAD dependent oxidoreductase. (375 aa)
Sps_02844Dipeptidyl-peptidase 7; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides. (718 aa)
Sps_02580Uncharacterized protein containing chitin-binding domain type 3; PFAM: Chitinase class I; Carbohydrate binding domain. (566 aa)
Sps_02469Hypothetical protein; PFAM: Isochorismatase family. (88 aa)
Sps_02468Hypothetical protein; PFAM: Isochorismatase family. (93 aa)
mtnNMethylthioadenosine nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily. (230 aa)
Sps_02428Putative membrane protein; PFAM: Protein of unknown function (DUF962). (181 aa)
Sps_02417Flavodoxin reductase family protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain. (367 aa)
Sps_02292Hypothetical protein; PFAM: ASCH domain; Belongs to the UPF0267 family. (105 aa)
Sps_02231Putative enzyme involved in biosynthesis of extracellular polysaccharides; PFAM: Antibiotic biosynthesis monooxygenase. (96 aa)
Sps_02108Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase; 'PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain'. (355 aa)
Sps_02100Amidohydrolase, imidazolonepropionase; PFAM: Amidohydrolase. (454 aa)
Sps_02099Amidohydrolase, imidazolonepropionase; PFAM: Amidohydrolase; Amidohydrolase family. (1027 aa)
Sps_02086hydroxymethylglutaryl-CoA lyase; PFAM: HMGL-like. (296 aa)
Sps_02081'PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain'. (389 aa)
Sps_02044'PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain'. (385 aa)
Sps_02042PFAM: Enoyl-CoA hydratase/isomerase family; 2-enoyl-CoA Hydratase C-terminal region. (377 aa)
Sps_02041PFAM: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; NAD binding domain of 6-phosphogluconate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family. (312 aa)
kynATryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety. (281 aa)
lonATP-dependent proteinase; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (785 aa)
Sps_01737Acetyltransferase, ribosomal protein N-acetylase; PFAM: Acetyltransferase (GNAT) domain. (176 aa)
hutIImidazolonepropionase; PFAM: Amidohydrolase; TIGRFAM: imidazolonepropionase. (408 aa)
deoDPFAM: Phosphorylase superfamily; 'TIGRFAM: purine-nucleoside phosphorylase, family 1 (deoD)'. (234 aa)
Sps_04325PFAM: VanZ like family. (121 aa)
ftsHMembrane protease FtsH catalytic subunit; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (657 aa)
deoD-2PFAM: Phosphorylase superfamily; 'TIGRFAM: purine-nucleoside phosphorylase, family 1 (deoD)'. (236 aa)
Sps_04225Nicotinamidase-like amidase; PFAM: Isochorismatase family. (187 aa)
Sps_01715Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family; PFAM: XdhC Rossmann domain; XdhC and CoxI family. (339 aa)
astBSuccinylarginine dihydrolase; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2). (445 aa)
Sps_016272-oxoglutarate dehydrogenase E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (396 aa)
Sps_01572HIT family hydrolase, diadenosine tetraphosphate hydrolase; PFAM: HIT domain. (118 aa)
Sps_01543PFAM: Antibiotic biosynthesis monooxygenase. (115 aa)
Sps_01519Putative translation initiation inhibitor, yjgF family; PFAM: Endoribonuclease L-PSP. (124 aa)
Sps_01497Tryptophanase; PFAM: Beta-eliminating lyase; 'TIGRFAM: tryptophanase, leader peptide-associated'. (465 aa)
Sps_01434PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase. (582 aa)
cddCytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis. (296 aa)
speAArginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (637 aa)
Sps_01311PFAM: Endoribonuclease L-PSP; TIGRFAM: reactive intermediate/imine deaminase. (126 aa)
Sps_01310Hypothetical protein; PFAM: Serine dehydratase alpha chain; Belongs to the UPF0597 family. (424 aa)
Sps_01264Cytosine deaminase-like metal-dependent hydrolase; PFAM: Amidohydrolase family. (431 aa)
Sps_01249Hypothetical protein. (90 aa)
Sps_01110Molybdenum cofactor sulfurylase; PFAM: XdhC Rossmann domain; XdhC and CoxI family; TIGRFAM: xanthine dehydrogenase accessory protein XdhC. (307 aa)
alcPFAM: Allantoicase repeat; TIGRFAM: allantoicase; Belongs to the allantoicase family. (352 aa)
Sps_01106PFAM: Ureidoglycolate hydrolase. (172 aa)
Sps_01105Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family. (428 aa)
Sps_01074'PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain'; TIGRFAM: alanine dehydrogenase; Belongs to the AlaDH/PNT family. (371 aa)
Sps_01049PFAM: FHA domain; TIGRFAM: type VI secretion system FHA domain protein. (450 aa)
Sps_01023Putative enzyme involved in biosynthesis of extracellular polysaccharides; PFAM: Antibiotic biosynthesis monooxygenase. (99 aa)
Sps_00973Putative ATP-dependent protease; PFAM: AAA domain; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: lon-related putative ATP-dependent protease. (806 aa)
Sps_00965Dihydrodipicolinate synthase/N-acetylneuraminate lyase; PFAM: Dihydrodipicolinate synthetase family; Belongs to the DapA family. (299 aa)
Sps_00875Nicotinamidase-like amidase; PFAM: Isochorismatase family. (223 aa)
Sps_00843'PFAM: homogentisate 1,2-dioxygenase'; 'TIGRFAM: homogentisate 1,2-dioxygenase'. (433 aa)
Sps_00790Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit; 'PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain'. (320 aa)
Sps_04429Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase family. (564 aa)
Sps_00789Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component alpha subunit; PFAM: Dehydrogenase E1 component. (392 aa)
astESuccinylglutamate desuccinylase; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily. (344 aa)
Sps_00775Hypothetical protein; PFAM: HD domain; 'TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, putative'. (197 aa)
Sps_00774Hypothetical protein; PFAM: Phosphohydrolase-associated domain; 'TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, putative'. (204 aa)
Sps_03248Nicotinamidase-like amidase; PFAM: Isochorismatase family. (313 aa)
hutUUrocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (556 aa)
hutHHistidine ammonia-lyase; PFAM: Aromatic amino acid lyase; TIGRFAM: histidine ammonia-lyase. (510 aa)
Sps_05382N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase. (211 aa)
hslVHslV component of HslUV peptidase; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery. (174 aa)
Sps_05175Dipeptidyl-peptidase 7; PFAM: Peptidase S46. (740 aa)
Sps_05083PFAM: AMIN domain; N-acetylmuramoyl-L-alanine amidase; LysM domain. (440 aa)
Sps_05067PFAM: Arginine N-succinyltransferase beta subunit; TIGRFAM: arginine N-succinyltransferase; arginine and ornithine succinyltransferase subunits. (339 aa)
astDSuccinylglutamic semialdehyde dehydrogenase; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate. (486 aa)
Sps_05022Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. (1059 aa)
Sps_05001Nicotinamidase-like amidase; PFAM: Isochorismatase family. (205 aa)
nagBGlucosamine-6-phosphate isomerase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion. (263 aa)
gcvTGlycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine. (364 aa)
gcvH-2Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (129 aa)
gcvP-2Glycine dehydrogenase, decarboxylating; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. (962 aa)
Sps_04814Putative translation initiation inhibitor, yjgF family; PFAM: Endoribonuclease L-PSP. (130 aa)
Sps_04623'PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain'. (391 aa)
Sps_04493PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases. (264 aa)
Sps_04488Hypothetical protein; PFAM: Amidohydrolase. (114 aa)
Sps_04487Hypothetical protein; PFAM: Amidohydrolase family. (70 aa)
Sps_00705'PFAM: Sarcosine oxidase, gamma subunit family'; 'TIGRFAM: sarcosine oxidase, gamma subunit family, heterotetrameric form'. (236 aa)
Sps_00703'PFAM: Sarcosine oxidase, delta subunit family'; 'TIGRFAM: sarcosine oxidase, delta subunit family, heterotetrameric form'. (104 aa)
Sps_00702PFAM: FAD dependent oxidoreductase; 'TIGRFAM: sarcosine oxidase, beta subunit family, heterotetrameric form'. (417 aa)
gcvPGlycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. (960 aa)
gcvHGlycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (128 aa)
Sps_00691PFAM: Glycine cleavage T-protein C-terminal barrel domain; Aminomethyltransferase folate-binding domain; TIGRFAM: glycine cleavage system T protein. (375 aa)
dadAD-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids. (417 aa)
Sps_00668PFAM: Putative MetA-pathway of phenol degradation. (320 aa)
Sps_00605Putative ATP-dependent protease; PFAM: AAA domain; Lon protease (S16) C-terminal proteolytic domain. (589 aa)
Sps_00596PFAM: Bacterial NAD-glutamate dehydrogenase. (1612 aa)
aatleucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. (236 aa)
bptPutative arginyl-tRNA:protein arginylyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily. (237 aa)
clpSHypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. (102 aa)
Sps_00223'PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain'. (588 aa)
Sps_00222'PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain'. (551 aa)
tdhL-threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family. (341 aa)
Sps_00050Amidohydrolase, imidazolonepropionase; PFAM: Amidohydrolase; WD40-like Beta Propeller Repeat; Amidohydrolase family. (1081 aa)
Sps_00027Putative acid phosphatase; PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE. (348 aa)
dutDeoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. (152 aa)
Sps_03319PFAM: Endoribonuclease L-PSP; TIGRFAM: reactive intermediate/imine deaminase. (127 aa)
Sps_03336Histidine ammonia-lyase; PFAM: Aromatic amino acid lyase; TIGRFAM: phenylalanine ammonia-lyase. (520 aa)
dtdD-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (145 aa)
Sps_03403glycine/D-amino acid oxidase, deaminating; PFAM: FAD dependent oxidoreductase. (421 aa)
Sps_03405Dihydrodipicolinate synthase/N-acetylneuraminate lyase; PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: 4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family. (304 aa)
Sps_03424Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family; PFAM: XdhC Rossmann domain; XdhC and CoxI family. (329 aa)
Sps_03506Nicotinamidase-like amidase; PFAM: Isochorismatase family. (179 aa)
Sps_03666Phenylalanine 4-hydroxylase; PFAM: Biopterin-dependent aromatic amino acid hydroxylase; 'TIGRFAM: phenylalanine-4-hydroxylase, monomeric form'. (265 aa)
Sps_03854PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases. (273 aa)
Sps_03921PFAM: Domain of unknown function (DUF3291). (154 aa)
Sps_03941Amidase, hydantoinase/carbamoylase family; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; 'TIGRFAM: amidase, hydantoinase/carbamoylase family'. (409 aa)
Sps_03950Cytosine deaminase-like metal-dependent hydrolase; PFAM: Amidohydrolase family. (454 aa)
Sps_03976PFAM: Endoribonuclease L-PSP; TIGRFAM: reactive intermediate/imine deaminase. (129 aa)
Sps_03982Putative translation initiation inhibitor, yjgF family; PFAM: Endoribonuclease L-PSP. (127 aa)
Sps_03987PFAM: Protein of unknown function (DUF3726). (246 aa)
Sps_04023PFAM: Putative MetA-pathway of phenol degradation. (324 aa)
Sps_03302Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (413 aa)
Sps_04042Hypothetical protein. (57 aa)
surE5'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. (249 aa)
Sps_04109MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein. (265 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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