STRINGSTRING
Sps_05571 Sps_05571 Sps_00113 Sps_00113 Sps_00114 Sps_00114 flhB flhB Sps_00985 Sps_00985 Sps_00996 Sps_00996 Sps_02485 Sps_02485 Sps_02497 Sps_02497 flhB-2 flhB-2 Sps_03780 Sps_03780 Sps_03781 Sps_03781 Sps_05549 Sps_05549 Sps_05562 Sps_05562
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_05571Type III secretion apparatus H+-transporting two-sector ATPase; 'PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain'; 'TIGRFAM: type III secretion apparatus H+-transporting two-sector ATPase; ATPase, FliI/YscN family'. (448 aa)
Sps_00113Flagellar protein export ATPase FliI; 'PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain'; 'TIGRFAM: flagellar protein export ATPase FliI; ATPase, FliI/YscN family'. (444 aa)
Sps_00114Flagellar biosynthesis/type III secretory pathway protein; PFAM: Flagellar assembly protein FliH. (263 aa)
flhBFlagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family. (377 aa)
Sps_00985ATPase FliI/YscN family; 'PFAM: ATP synthase alpha/beta family, nucleotide-binding domain'; 'TIGRFAM: ATPase, FliI/YscN family'. (442 aa)
Sps_00996Type III secretion system major needle protein, YscF/MxiH/PrgI family; PFAM: Type III secretion needle MxiH like; TIGRFAM: type III secretion apparatus needle protein. (71 aa)
Sps_02485Flagellar biosynthesis/type III secretory pathway ATPase; 'PFAM: ATP synthase alpha/beta family, nucleotide-binding domain'; 'TIGRFAM: ATPase, FliI/YscN family'. (420 aa)
Sps_02497Flagellar biosynthesis pathway, component FlhB; PFAM: FlhB HrpN YscU SpaS Family. (348 aa)
flhB-2Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family. (377 aa)
Sps_03780Flagellar protein export ATPase FliI; 'PFAM: ATP synthase alpha/beta family, nucleotide-binding domain'; 'TIGRFAM: flagellar protein export ATPase FliI; ATPase, FliI/YscN family'. (446 aa)
Sps_03781Flagellar biosynthesis/type III secretory pathway protein; PFAM: Flagellar assembly protein FliH. (344 aa)
Sps_05549Type III secretion system major needle protein, YscF/MxiH/PrgI family; PFAM: Type III secretion needle MxiH like; TIGRFAM: type III secretion apparatus needle protein. (91 aa)
Sps_05562PFAM: V antigen (LcrV) protein. (317 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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