STRINGSTRING
Sps_00119 Sps_00119 Sps_00472 Sps_00472 Sps_00505 Sps_00505 pal pal Sps_00520 Sps_00520 Sps_00579 Sps_00579 Sps_00592 Sps_00592 Sps_00652 Sps_00652 Sps_00698 Sps_00698 Sps_01092 Sps_01092 Sps_01381 Sps_01381 Sps_01499 Sps_01499 Sps_01824 Sps_01824 Sps_01854 Sps_01854 Sps_01899 Sps_01899 Sps_01905 Sps_01905 Sps_01924 Sps_01924 Sps_02162 Sps_02162 Sps_02221 Sps_02221 Sps_02312 Sps_02312 Sps_02329 Sps_02329 Sps_02396 Sps_02396 Sps_02496 Sps_02496 Sps_02786 Sps_02786 Sps_02891 Sps_02891 Sps_02903 Sps_02903 Sps_02913 Sps_02913 Sps_02914 Sps_02914 Sps_02960 Sps_02960 Sps_03059 Sps_03059 Sps_03063 Sps_03063 Sps_03101 Sps_03101 Sps_03145 Sps_03145 Sps_03151 Sps_03151 Sps_03185 Sps_03185 Sps_03211 Sps_03211 Sps_03215 Sps_03215 Sps_03377 Sps_03377 Sps_03624 Sps_03624 Sps_03630 Sps_03630 Sps_03707 Sps_03707 Sps_03709 Sps_03709 Sps_03710 Sps_03710 Sps_03746 Sps_03746 Sps_03876 Sps_03876 Sps_03978 Sps_03978 Sps_03994 Sps_03994 Sps_04024 Sps_04024 Sps_04053 Sps_04053 Sps_04236 Sps_04236 Sps_04422 Sps_04422 Sps_04481 Sps_04481 Sps_04637 Sps_04637 Sps_04927 Sps_04927 Sps_04963 Sps_04963 Sps_04966 Sps_04966 Sps_05005 Sps_05005 Sps_05008 Sps_05008 Sps_05108 Sps_05108 Sps_05214 Sps_05214 argH argH Sps_05583 Sps_05583 Sps_05602 Sps_05602
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00119PFAM: OmpA family. (302 aa)
Sps_00472PFAM: Domain of Unknown Function (DUF748). (1017 aa)
Sps_00505PFAM: OmpA family. (289 aa)
palPeptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (178 aa)
Sps_00520Hypothetical protein. (383 aa)
Sps_00579PFAM: OmpA family; TIGRFAM: proteobacterial sortase system peptidoglycan-associated protein. (245 aa)
Sps_00592PFAM: Protein of unknown function (DUF1302). (682 aa)
Sps_00652PFAM: Gram-negative porin. (393 aa)
Sps_00698Outer membrane protein (porin); PFAM: Gram-negative porin. (357 aa)
Sps_01092Nucleoside-binding outer membrane protein; 'PFAM: Nucleoside-specific channel-forming protein, Tsx'. (280 aa)
Sps_01381PFAM: Outer membrane protein beta-barrel domain. (304 aa)
Sps_01499'PFAM: Carbohydrate-selective porin, OprB family'. (395 aa)
Sps_01824Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: OmpA-like transmembrane domain; OmpA family; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. (366 aa)
Sps_01854Outer membrane protein (porin); PFAM: Gram-negative porin. (399 aa)
Sps_01899PFAM: Protein of unknown function (DUF3374); 'TIGRFAM: decaheme-associated outer membrane protein, MtrB/PioB family'. (708 aa)
Sps_01905PFAM: Protein of unknown function (DUF3374); 'TIGRFAM: decaheme-associated outer membrane protein, MtrB/PioB family'. (703 aa)
Sps_01924PFAM: Outer membrane protein beta-barrel domain; OmpA family. (359 aa)
Sps_02162PFAM: Alginate export. (396 aa)
Sps_02221Outer membrane protein (porin); PFAM: Gram-negative porin. (319 aa)
Sps_02312PFAM: Gram-negative porin. (408 aa)
Sps_02329PFAM: OmpA family. (189 aa)
Sps_02396PFAM: OmpA-like transmembrane domain; OmpA family; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. (366 aa)
Sps_02496PFAM: OmpA family. (252 aa)
Sps_02786Hypothetical protein. (461 aa)
Sps_02891Hypothetical protein. (449 aa)
Sps_02903Hypothetical protein. (390 aa)
Sps_02913Outer membrane protein (porin); PFAM: Gram-negative porin. (272 aa)
Sps_02914Outer membrane protein (porin); PFAM: Gram-negative porin. (341 aa)
Sps_02960PFAM: OmpA family. (229 aa)
Sps_03059Hypothetical protein; PFAM: Putative flagellar system-associated repeat; TIGRFAM: T1SS-143 repeat domain. (4000 aa)
Sps_03063Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: OmpA family. (198 aa)
Sps_03101PFAM: OmpA family. (199 aa)
Sps_03145Nucleoside-binding outer membrane protein; 'PFAM: Nucleoside-specific channel-forming protein, Tsx'. (250 aa)
Sps_03151PFAM: Outer membrane protein beta-barrel domain; OmpA family; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. (338 aa)
Sps_03185'PFAM: Lactonase, 7-bladed beta-propeller'. (445 aa)
Sps_03211PFAM: Outer membrane protein beta-barrel domain. (181 aa)
Sps_03215Hypothetical protein. (239 aa)
Sps_03377PFAM: OmpA family. (182 aa)
Sps_03624PFAM: Polysaccharide biosynthesis/export protein. (357 aa)
Sps_03630PFAM: OmpA family. (258 aa)
Sps_03707Hypothetical protein. (1449 aa)
Sps_03709Hypothetical protein. (189 aa)
Sps_03710Hypothetical protein. (245 aa)
Sps_03746PFAM: Capsule biosynthesis GfcC; Polysaccharide biosynthesis/export protein; SLBB domain; JUMPstart RNA. (919 aa)
Sps_03876Nucleoside-binding outer membrane protein; 'PFAM: Nucleoside-specific channel-forming protein, Tsx'. (255 aa)
Sps_03978Hypothetical protein. (401 aa)
Sps_03994PFAM: Outer membrane protein beta-barrel domain; OmpA family. (348 aa)
Sps_04024Hypothetical protein. (265 aa)
Sps_04053PFAM: Outer membrane protein beta-barrel domain. (291 aa)
Sps_04236Nucleoside-binding outer membrane protein; 'PFAM: Nucleoside-specific channel-forming protein, Tsx'. (275 aa)
Sps_04422PFAM: Phosphate-selective porin O and P. (446 aa)
Sps_04481Outer membrane receptor for ferrienterochelin and colicins; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (678 aa)
Sps_04637PFAM: Outer membrane protein beta-barrel domain. (209 aa)
Sps_04927PFAM: Gram-negative porin. (358 aa)
Sps_04963PFAM: Phosphate-selective porin O and P. (392 aa)
Sps_04966Outer membrane protein (porin); PFAM: Gram-negative porin. (402 aa)
Sps_05005PFAM: Outer membrane protein beta-barrel domain. (246 aa)
Sps_05008PFAM: Outer membrane protein beta-barrel domain; Domain of unknown function (DUF4347). (3465 aa)
Sps_05108TIGRFAM: outer membrane protein. (249 aa)
Sps_05214Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: Glycine zipper; OmpA family. (226 aa)
argHPFAM: Lyase; Argininosuccinate lyase C-terminal; TIGRFAM: argininosuccinate lyase. (455 aa)
Sps_05583PFAM: Outer membrane protein beta-barrel domain. (178 aa)
Sps_05602PFAM: Outer membrane protein beta-barrel domain. (203 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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