STRINGSTRING
Sps_03402 Sps_03402 Sps_00883 Sps_00883 Sps_00929 Sps_00929 ruvB ruvB ruvC ruvC Sps_01251 Sps_01251 xerD xerD Sps_03394 Sps_03394 Sps_03865 Sps_03865
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_03402'PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family'; TIGRFAM: integron integrase; Belongs to the 'phage' integrase family. (318 aa)
Sps_00883Site-specific recombinase XerD; PFAM: Phage integrase family; Belongs to the 'phage' integrase family. (355 aa)
Sps_00929Site-specific recombinase XerD; 'PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family'. (430 aa)
ruvBHolliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (339 aa)
ruvCHolliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (173 aa)
Sps_01251PFAM: Phage integrase family. (170 aa)
xerDTyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (305 aa)
Sps_03394PFAM: Phage integrase family. (211 aa)
Sps_03865Hypothetical protein. (587 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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