STRINGSTRING
msbA msbA Sps_01771 Sps_01771 Sps_01772 Sps_01772 Sps_03060 Sps_03060 Sps_03098 Sps_03098 Sps_03638 Sps_03638 Sps_04578 Sps_04578 Sps_04667 Sps_04667 Sps_04895 Sps_04895 Sps_05024 Sps_05024 Sps_05025 Sps_05025
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
msbALipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (606 aa)
Sps_01771ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter; ABC transporter transmembrane region. (562 aa)
Sps_01772ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter; ABC transporter transmembrane region. (550 aa)
Sps_03060Type I secretion system ATPase, LssB family; PFAM: ABC transporter; ABC transporter transmembrane region; 'TIGRFAM: type I secretion system ATPase, LssB family'. (710 aa)
Sps_03098Type I secretion system ATPase, LssB family; PFAM: ABC transporter; ABC transporter transmembrane region; Peptidase C39 family; 'TIGRFAM: type I secretion system ATPase, LssB family'. (724 aa)
Sps_03638ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter; ABC transporter transmembrane region. (609 aa)
Sps_04578Fused permease/ATPase component of ABC transporter involved in Fe-S cluster assembly; PFAM: ABC transporter; ABC transporter transmembrane region. (589 aa)
Sps_04667Colicin V processing peptidase; PFAM: ABC transporter; ABC transporter transmembrane region; Peptidase C39 family. (718 aa)
Sps_04895PFAM: ABC transporter; ABC transporter transmembrane region; 'TIGRFAM: ABC transporter, permease/ATP-binding protein'. (634 aa)
Sps_05024Cysteine export CydDC family ABC transporter permease subunit/ATP-binding protein CydC; PFAM: ABC transporter; ABC transporter transmembrane region; 'TIGRFAM: thiol reductant ABC exporter, CydC subunit'. (595 aa)
Sps_05025Cysteine export CydDC family ABC transporter permease subunit/ATP-binding protein CydD; PFAM: ABC transporter; ABC transporter transmembrane region; 'TIGRFAM: thiol reductant ABC exporter, CydD subunit'. (601 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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