STRINGSTRING
Sps_00220 Sps_00220 Sps_01361 Sps_01361 Sps_01766 Sps_01766 Sps_01774 Sps_01774 Sps_02184 Sps_02184 Sps_03345 Sps_03345 Sps_03342 Sps_03342 Sps_02187 Sps_02187
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00220Polyketide synthase family protein; 'PFAM: Phosphopantetheine attachment site; Acyl transferase domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain'. (977 aa)
Sps_013613-oxoacyl-(acyl-carrier-protein) synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. (412 aa)
Sps_01766Amino acid adenylation enzyme/thioester reductase family protein; 'PFAM: Acyl transferase domain; Methyltransferase domain; AMP-binding enzyme; Nonribosomal peptide synthase; Condensation domain; Beta-ketoacyl synthase, C-terminal domain; Thioesterase domain; Phosphopantetheine attachment site; KR domain; Beta-ketoacyl synthase, N-terminal domain; AMP-binding enzyme C-terminal domain'; TIGRFAM: amino acid adenylation domain. (3965 aa)
Sps_01774'PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain'; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (403 aa)
Sps_02184Hypothetical protein; 'PFAM: Phosphopantetheine attachment site; Acyl transferase domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain'; TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA. (1492 aa)
Sps_03345'PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain'; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (411 aa)
Sps_03342'PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain'; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (403 aa)
Sps_02187'PFAM: FabA-like domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain'; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (1960 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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