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Sps_04951 Sps_04951 Sps_00118 Sps_00118 Sps_00172 Sps_00172 Sps_00325 Sps_00325 Sps_01772 Sps_01772 Sps_02679 Sps_02679 ntrC ntrC Sps_03658 Sps_03658 Sps_03664 Sps_03664 Sps_03787 Sps_03787
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_04951Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; 'PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain'. (460 aa)
Sps_00118Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; 'PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain'. (433 aa)
Sps_00172Two component, sigma54 specific, transcriptional regulator, Fis family; 'PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain'. (460 aa)
Sps_00325GAF modulated sigma54 specific transcriptional regulator, Fis family; 'PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain'. (596 aa)
Sps_01772ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter; ABC transporter transmembrane region. (550 aa)
Sps_02679Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains; PFAM: GAF domain; Sigma-54 interaction domain. (570 aa)
ntrCNitrogen metabolism transcriptional regulator, NtrC, Fis family; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (469 aa)
Sps_03658Two component, sigma54 specific, transcriptional regulator, Fis family; 'PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain'. (459 aa)
Sps_03664Transcriptional regulator, TyrR; PFAM: ACT domain; Sigma-54 interaction domain. (534 aa)
Sps_03787Sigma54 specific transcriptional regulator, Fis family; 'PFAM: Flagellar regulatory protein FleQ; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain'. (477 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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