STRINGSTRING
Sps_02516 Sps_02516 Sps_01606 Sps_01606 Sps_01530 Sps_01530 Sps_01355 Sps_01355 Sps_00642 Sps_00642 Sps_05534 Sps_05534 Sps_04941 Sps_04941 Sps_02946 Sps_02946 Sps_02929 Sps_02929 Sps_02676 Sps_02676 Sps_02675 Sps_02675 Sps_02268 Sps_02268
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_02516PFAM: Bacterial pre-peptidase C-terminal domain; PKD domain. (327 aa)
Sps_01606Vibriolysin; 'PFAM: Fungalysin/Thermolysin Propeptide Motif; Bacterial pre-peptidase C-terminal domain; Thermolysin metallopeptidase, alpha-helical domain; PKD domain; Peptidase propeptide and YPEB domain; Thermolysin metallopeptidase, catalytic domain'. (774 aa)
Sps_01530Putative extracellular nuclease; PFAM: Endonuclease/Exonuclease/phosphatase family; PKD domain; Lamin Tail Domain. (955 aa)
Sps_01355Chitinase; PFAM: Glycosyl hydrolases family 18; Carbohydrate binding domain. (917 aa)
Sps_00642PDK repeat-containing protein; PFAM: Bacterial pre-peptidase C-terminal domain; PKD domain; Pregnancy-associated plasma protein-A. (1121 aa)
Sps_05534PFAM: PKD domain; Immune inhibitor A peptidase M6; TIGRFAM: M6 family metalloprotease domain; GlyGly-CTERM domain. (971 aa)
Sps_04941PFAM: PA domain; Peptidase inhibitor I9; Subtilase family; TIGRFAM: GlyGly-CTERM domain. (1282 aa)
Sps_02946PFAM: YHYH protein. (459 aa)
Sps_02929PFAM: Proprotein convertase P-domain; PKD domain; Subtilase family; Belongs to the peptidase S8 family. (836 aa)
Sps_02676Zinc metalloprotease (elastase); 'PFAM: Fungalysin/Thermolysin Propeptide Motif; Carbohydrate binding domain; Thermolysin metallopeptidase, alpha-helical domain; PKD domain; Peptidase propeptide and YPEB domain; Thermolysin metallopeptidase, catalytic domain'. (793 aa)
Sps_02675PFAM: Carbohydrate binding domain; PKD domain; Peptidase family M28. (693 aa)
Sps_02268PDK repeat-containing protein; PFAM: Fibronectin type III domain; PKD domain; Metallo-peptidase family M12B Reprolysin-like. (1001 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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