STRINGSTRING
Sps_00249 Sps_00249 Sps_01019 Sps_01019 Sps_02455 Sps_02455 Sps_03685 Sps_03685 Sps_03762 Sps_03762 Sps_03886 Sps_03886 Sps_03929 Sps_03929 Sps_03970 Sps_03970 Sps_04112 Sps_04112 Sps_04216 Sps_04216 Sps_04223 Sps_04223 Sps_04619 Sps_04619
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00249CheA signal transduction histidine kinase; 'PFAM: CheW-like domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transducing histidine kinase, homodimeric domain; Hpt domain'. (701 aa)
Sps_01019'PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; Hpt domain'. (929 aa)
Sps_02455PFAM: Hpt domain. (121 aa)
Sps_03685PAS domain S-box; 'PFAM: HAMP domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS domain; Hpt domain; PAS fold'; TIGRFAM: PAS domain S-box. (1178 aa)
Sps_03762Chemotaxis protein histidine kinase-like protein; 'PFAM: CheW-like domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transducing histidine kinase, homodimeric domain; Hpt domain'. (723 aa)
Sps_03886PAS domain S-box; 'PFAM: HAMP domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS domain; Hpt domain; PAS fold'; TIGRFAM: PAS domain S-box. (1484 aa)
Sps_03929'PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; Hpt domain'. (988 aa)
Sps_03970Hpt domain-containing protein; PFAM: Hpt domain. (130 aa)
Sps_04112Hpt sensor hybrid histidine kinase; 'PFAM: HAMP domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; Uncharacterized signal transduction histidine kinase domain (DUF2222); Hpt domain'. (937 aa)
Sps_04216'PFAM: HAMP domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; Hpt domain'; TIGRFAM: TMAO reductase sytem sensor TorS. (995 aa)
Sps_04223'PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain'. (978 aa)
Sps_04619Hpt domain-containing protein; PFAM: Hpt domain. (115 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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