STRINGSTRING
Sps_04549 Sps_04549 Sps_03514 Sps_03514 Sps_03037 Sps_03037 Sps_01308 Sps_01308 Sps_00927 Sps_00927 Sps_00417 Sps_00417 Sps_00177 Sps_00177
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_04549PFAM: HD domain; GAF domain. (538 aa)
Sps_03514Metal dependent phosphohydrolase; PFAM: Domain of unknown function (DUF3391); HD domain; TIGRFAM: HDIG domain. (410 aa)
Sps_03037HD-GYP domain-containing protein; 'PFAM: HD domain; HAMP domain; Bacterial extracellular solute-binding proteins, family 3'. (1065 aa)
Sps_01308Uncharacterized domain HDIG-containing protein; PFAM: Domain of unknown function (DUF3391); HD domain; TIGRFAM: HDIG domain. (410 aa)
Sps_00927PFAM: HD domain; Domain of unknown function (DUF3369); Response regulator receiver domain. (531 aa)
Sps_00417Metal dependent phosphohydrolase; PFAM: Domain of unknown function (DUF3391); HD domain; TIGRFAM: HDIG domain. (431 aa)
Sps_00177Metal dependent phosphohydrolase; PFAM: Domain of unknown function (DUF3391); HD domain. (392 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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