STRINGSTRING
Sps_00698 Sps_00698 Sps_01734 Sps_01734 sbcD sbcD Sps_01854 Sps_01854 Sps_02221 Sps_02221 Sps_02312 Sps_02312 Sps_02361 Sps_02361 pgi pgi Sps_02579 Sps_02579 Sps_02604 Sps_02604 Sps_02734 Sps_02734 Sps_02786 Sps_02786 Sps_02847 Sps_02847 Sps_02891 Sps_02891 Sps_02903 Sps_02903 Sps_02913 Sps_02913 Sps_02914 Sps_02914 Sps_02921 Sps_02921 Sps_03058 Sps_03058 Sps_03661 Sps_03661 Sps_03792 Sps_03792 Sps_03793 Sps_03793 Sps_03794 Sps_03794 Sps_03880 Sps_03880 Sps_03978 Sps_03978 Sps_04138 Sps_04138 deoC deoC Sps_04268 Sps_04268 Sps_04318 Sps_04318 Sps_04757 Sps_04757 Sps_04865 Sps_04865 Sps_04927 Sps_04927 Sps_04963 Sps_04963 Sps_04966 Sps_04966 Sps_05536 Sps_05536 apt apt Sps_01564 Sps_01564 Sps_01534 Sps_01534 cdd cdd Sps_01107 Sps_01107 serS serS Sps_01062 Sps_01062 Sps_00786 Sps_00786 Sps_00719 Sps_00719 Sps_00652 Sps_00652 Sps_00592 Sps_00592 Sps_00520 Sps_00520 Sps_00326 Sps_00326 Sps_00098 Sps_00098 Sps_00096 Sps_00096
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_00698Outer membrane protein (porin); PFAM: Gram-negative porin. (357 aa)
Sps_01734Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family. (330 aa)
sbcDExodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (381 aa)
Sps_01854Outer membrane protein (porin); PFAM: Gram-negative porin. (399 aa)
Sps_02221Outer membrane protein (porin); PFAM: Gram-negative porin. (319 aa)
Sps_02312PFAM: Gram-negative porin. (408 aa)
Sps_02361Hypothetical protein. (378 aa)
pgiPFAM: Phosphoglucose isomerase; Belongs to the GPI family. (545 aa)
Sps_02579PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase. (156 aa)
Sps_02604PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase. (263 aa)
Sps_02734Putative membrane protein; PFAM: DoxX. (194 aa)
Sps_02786Hypothetical protein. (461 aa)
Sps_02847PFAM: Catalase; Catalase-related immune-responsive; Belongs to the catalase family. (488 aa)
Sps_02891Hypothetical protein. (449 aa)
Sps_02903Hypothetical protein. (390 aa)
Sps_02913Outer membrane protein (porin); PFAM: Gram-negative porin. (272 aa)
Sps_02914Outer membrane protein (porin); PFAM: Gram-negative porin. (341 aa)
Sps_02921Beta-galactosidase/beta-glucuronidase; 'PFAM: Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2; Beta galactosidase small chain; Glycosyl hydrolases family 2, sugar binding domain'. (1075 aa)
Sps_03058PFAM: Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (338 aa)
Sps_03661PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase. (113 aa)
Sps_03792Flagellin/flagellar hook associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (480 aa)
Sps_03793Flagellin/flagellar hook associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (485 aa)
Sps_03794Flagellar hook-associated protein 3; PFAM: Bacterial flagellin N-terminal helical region; TIGRFAM: flagellar hook-associated protein 3. (404 aa)
Sps_03880Putative membrane protein; PFAM: DoxX. (120 aa)
Sps_03978Hypothetical protein. (401 aa)
Sps_04138PFAM: Calcineurin-like phosphoesterase. (371 aa)
deoCDeoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 2 subfamily. (257 aa)
Sps_04268PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase. (205 aa)
Sps_04318PFAM: Protein of unknown function (DUF2804). (358 aa)
Sps_04757PFAM: Patatin-like phospholipase. (339 aa)
Sps_04865PFAM: Serine carboxypeptidase. (515 aa)
Sps_04927PFAM: Gram-negative porin. (358 aa)
Sps_04963PFAM: Phosphate-selective porin O and P. (392 aa)
Sps_04966Outer membrane protein (porin); PFAM: Gram-negative porin. (402 aa)
Sps_05536PFAM: Trehalase. (717 aa)
aptAdenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. (183 aa)
Sps_01564PFAM: DoxX. (203 aa)
Sps_01534PFAM: Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (234 aa)
cddCytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis. (296 aa)
Sps_01107Hydroxyisourate hydrolase; PFAM: HIUase/Transthyretin family; TIGRFAM: hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. (113 aa)
serSseryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). (428 aa)
Sps_01062FtsH-interacting integral membrane protein; PFAM: Inhibitor of apoptosis-promoting Bax1; Belongs to the BI1 family. (220 aa)
Sps_00786Phosphoglucomutase, alpha-D-glucose phosphate-specific; 'PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I'; 'TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific'. (554 aa)
Sps_00719Bacterial flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (228 aa)
Sps_00652PFAM: Gram-negative porin. (393 aa)
Sps_00592PFAM: Protein of unknown function (DUF1302). (682 aa)
Sps_00520Hypothetical protein. (383 aa)
Sps_00326PFAM: Catalase; Catalase-related immune-responsive; Belongs to the catalase family. (502 aa)
Sps_00098Flagellar hook-associated protein 3; PFAM: Bacterial flagellin N-terminal helical region; TIGRFAM: flagellar hook-associated protein 3. (305 aa)
Sps_00096Flagellin/flagellar hook associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (284 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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