STRINGSTRING
Sps_04837 Sps_04837 Sps_04838 Sps_04838 Sps_04861 Sps_04861 Sps_04862 Sps_04862 Sps_05342 Sps_05342 Sps_05343 Sps_05343 Sps_05344 Sps_05344 Sps_05345 Sps_05345 Sps_05347 Sps_05347 Sps_05348 Sps_05348 Sps_05349 Sps_05349 Sps_05449 Sps_05449 Sps_05384 Sps_05384 Sps_05450 Sps_05450 Sps_05451 Sps_05451 Sps_05452 Sps_05452 Sps_00615 Sps_00615 Sps_02090 Sps_02090 Sps_02375 Sps_02375 Sps_02376 Sps_02376 Sps_02378 Sps_02378 Sps_02381 Sps_02381 Sps_02382 Sps_02382
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_04837TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (461 aa)
Sps_04838Hypothetical protein. (206 aa)
Sps_04861PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (192 aa)
Sps_04862PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (174 aa)
Sps_05342TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (279 aa)
Sps_05343PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (192 aa)
Sps_05344TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (151 aa)
Sps_05345PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (173 aa)
Sps_05347PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (166 aa)
Sps_05348PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (171 aa)
Sps_05349PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (225 aa)
Sps_05449'PFAM: Type II secretion system (T2SS), protein J; Type IV pilin N-term methylation site GFxxxE'; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; type II secretion system protein J. (256 aa)
Sps_05384PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (141 aa)
Sps_05450'PFAM: Prokaryotic N-terminal methylation motif; Type II secretion system (T2SS), protein I'; TIGRFAM: type II secretion system protein I; prepilin-type N-terminal cleavage/methylation domain. (136 aa)
Sps_05451PFAM: Type II transport protein GspH; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; type II secretion system protein H. (198 aa)
Sps_05452'PFAM: Type IV pilin N-term methylation site GFxxxE; Type II secretion system (T2SS), protein G'; TIGRFAM: type II secretion system protein G; prepilin-type N-terminal cleavage/methylation domain. (144 aa)
Sps_00615PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (187 aa)
Sps_02090PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (188 aa)
Sps_02375PFAM: Type II transport protein GspH; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (169 aa)
Sps_02376PFAM: Type IV pilin N-term methylation site GFxxxE; Type II transport protein GspH; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (168 aa)
Sps_02378PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (129 aa)
Sps_02381TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (327 aa)
Sps_02382TIGRFAM: type IV pilus modification protein PilV; prepilin-type N-terminal cleavage/methylation domain. (183 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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