STRINGSTRING
Sps_05594 Sps_05594 Sps_02372 Sps_02372 Sps_01568 Sps_01568 Sps_04128 Sps_04128 Sps_04446 Sps_04446 Sps_04726 Sps_04726 Sps_04962 Sps_04962
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sps_05594PFAM: TonB-dependent Receptor Plug Domain; Outer membrane protein beta-barrel family; TIGRFAM: TonB-dependent siderophore receptor. (708 aa)
Sps_02372PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent receptor. (878 aa)
Sps_01568Outer membrane receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (724 aa)
Sps_04128PFAM: TonB-dependent Receptor Plug Domain; Domain of unknown function (DUF4480); Outer membrane protein beta-barrel family; TIGRFAM: TonB-dependent receptor. (929 aa)
Sps_04446Outer membrane receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (758 aa)
Sps_04726Outer membrane receptor for ferrienterochelin and colicins; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent copper receptor. (687 aa)
Sps_04962Outer membrane receptor for Fe3+-dicitrate; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (732 aa)
Your Current Organism:
Shewanella psychrophila
NCBI taxonomy Id: 225848
Other names: CGMCC 1.6159, JCM 13876, S. psychrophila, Shewanella psychrophila Xiao et al. 2007 emend. Thorell et al. 2019, Shewanella sp. WP2, strain WP2
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